View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5409_low_2 (Length: 442)
Name: NF5409_low_2
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5409_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 424
Target Start/End: Original strand, 26899660 - 26900080
Alignment:
| Q |
4 |
ggatactttgggtgttacaattaaataagttttgtcaaagaggtgcaattaggatttatgaggtgttactnnnnnnnnnntcttaaaatattttcaaact |
103 |
Q |
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| T |
26899660 |
ggatactttgggtgttacaattaaataagttttgtcaaagaggtgcaattaggatttatggggtgttactagaaaaaaaatcttataatattttcaaact |
26899759 |
T |
|
| Q |
104 |
atcgatgaaaaatacatcaaaatagatgcattttcaaattccatccattagaaaatgctaattaaggaacatcctaaacatggctaatccttaccatgac |
203 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26899760 |
atcgatgaaaaatacattaaaatagatctattttcaaattccatccattagaaaatgttaattaaggaacatcctaaacatgactaatccttaccatgac |
26899859 |
T |
|
| Q |
204 |
tagtttcatattgcacaaaagatttaagctgaaaccatatatctcagcaccgtcagnnnnnnncaattttctcatgatcttatggcacatccaaaccaat |
303 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
26899860 |
tagtttcatattgcacaatagatttaagctgaaaccatatatctcagcaccgtcagaaaaaaacaattttctcatgatcttatgacacatccaaaccaat |
26899959 |
T |
|
| Q |
304 |
gtttgtatgttacatatctgtcccacatgcctaaaggtgatagcaaattaatcatataaagtttgtgtac-atgatttatatgctgtttgatgcatgctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| | |||||||| |||||||||||||| |
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| T |
26899960 |
gtttgtatgttacatatctgtcccacatgcctaaaggtgaaagcgaattaatcatataaagtttgtgtactatg-tatatatgctttttgatgcatgctg |
26900058 |
T |
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| Q |
403 |
aaggttccaaaaaggaaaacat |
424 |
Q |
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| T |
26900059 |
aaggttccaaaatggaaaacat |
26900080 |
T |
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