View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5409_low_4 (Length: 353)

Name: NF5409_low_4
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5409_low_4
NF5409_low_4
[»] chr2 (15 HSPs)
chr2 (16-350)||(5565519-5565853)
chr2 (245-306)||(30265241-30265302)
chr2 (245-305)||(14385218-14385278)
chr2 (245-304)||(30523415-30523474)
chr2 (245-345)||(32951014-32951116)
chr2 (245-328)||(8183984-8184068)
chr2 (245-305)||(33206925-33206985)
chr2 (245-305)||(5002669-5002729)
chr2 (245-296)||(15803310-15803361)
chr2 (245-296)||(36030931-36030982)
chr2 (250-296)||(16625697-16625742)
chr2 (245-297)||(26618496-26618548)
chr2 (258-297)||(38325257-38325297)
chr2 (245-305)||(39913411-39913471)
chr2 (248-299)||(39925129-39925181)
[»] chr1 (18 HSPs)
chr1 (246-304)||(34749899-34749957)
chr1 (245-298)||(718464-718517)
chr1 (245-299)||(41432651-41432705)
chr1 (245-306)||(30543245-30543306)
chr1 (245-305)||(28848682-28848742)
chr1 (246-294)||(52073352-52073400)
chr1 (240-313)||(50162271-50162345)
chr1 (245-305)||(23800486-23800546)
chr1 (249-308)||(23079916-23079975)
chr1 (245-304)||(33579391-33579450)
chr1 (245-296)||(43530190-43530241)
chr1 (245-296)||(51303067-51303118)
chr1 (279-316)||(33643810-33643848)
chr1 (245-306)||(17556930-17556991)
chr1 (247-296)||(50097754-50097803)
chr1 (245-305)||(17416601-17416661)
chr1 (245-297)||(39508906-39508958)
chr1 (245-316)||(50084265-50084337)
[»] scaffold0110 (1 HSPs)
scaffold0110 (247-340)||(7541-7635)
[»] chr4 (10 HSPs)
chr4 (245-350)||(9021072-9021178)
chr4 (245-338)||(15451186-15451280)
chr4 (245-335)||(42777153-42777243)
chr4 (249-305)||(24662630-24662686)
chr4 (263-315)||(34236410-34236462)
chr4 (246-333)||(15498651-15498736)
chr4 (251-305)||(42759535-42759589)
chr4 (274-340)||(24682844-24682911)
chr4 (245-295)||(13984867-13984916)
chr4 (257-306)||(45022419-45022468)
[»] chr3 (15 HSPs)
chr3 (245-338)||(1132784-1132878)
chr3 (245-338)||(32858968-32859061)
chr3 (245-337)||(15499149-15499242)
chr3 (245-315)||(4247255-4247326)
chr3 (245-305)||(23568201-23568261)
chr3 (256-334)||(36598392-36598470)
chr3 (245-316)||(43273945-43274015)
chr3 (245-296)||(3334002-3334053)
chr3 (245-296)||(35283225-35283276)
chr3 (245-296)||(53620359-53620410)
chr3 (245-306)||(2984029-2984090)
chr3 (245-306)||(50201706-50201767)
chr3 (271-307)||(37457190-37457226)
chr3 (245-297)||(38401810-38401862)
chr3 (262-306)||(54089336-54089380)
[»] chr8 (10 HSPs)
chr8 (246-305)||(37388418-37388477)
chr8 (245-305)||(3394099-3394159)
chr8 (245-296)||(13258624-13258675)
chr8 (245-313)||(13537480-13537550)
chr8 (245-313)||(13627028-13627098)
chr8 (245-296)||(1839712-1839763)
chr8 (263-298)||(5941220-5941255)
chr8 (246-297)||(15108155-15108206)
chr8 (271-305)||(4429587-4429621)
chr8 (245-296)||(39194069-39194121)
[»] chr5 (14 HSPs)
chr5 (262-316)||(2561256-2561311)
chr5 (245-305)||(19389711-19389771)
chr5 (245-297)||(28523756-28523808)
chr5 (245-296)||(17668026-17668077)
chr5 (245-338)||(9684640-9684734)
chr5 (245-329)||(7398639-7398724)
chr5 (245-293)||(3924751-3924799)
chr5 (245-316)||(33682510-33682582)
chr5 (245-305)||(35042342-35042402)
chr5 (245-296)||(4841601-4841652)
chr5 (247-316)||(35704752-35704822)
chr5 (262-338)||(6816378-6816455)
chr5 (249-297)||(31632976-31633024)
chr5 (263-307)||(43496646-43496690)
[»] chr7 (8 HSPs)
chr7 (245-338)||(23465849-23465943)
chr7 (245-305)||(14676368-14676428)
chr7 (245-338)||(45510480-45510574)
chr7 (248-296)||(46303389-46303437)
chr7 (245-315)||(42592999-42593070)
chr7 (245-295)||(38138069-38138119)
chr7 (245-285)||(24923297-24923337)
chr7 (245-296)||(42112850-42112902)
[»] chr6 (3 HSPs)
chr6 (245-329)||(16329517-16329602)
chr6 (245-308)||(13120301-13120365)
chr6 (245-336)||(34557024-34557116)
[»] scaffold1763 (1 HSPs)
scaffold1763 (245-305)||(487-547)
[»] scaffold0008 (1 HSPs)
scaffold0008 (120-164)||(250309-250353)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 5565519 - 5565853
Alignment:
Q  16 cagaaatttcctcaatcaaatatttcactaataataccttgacccataatagcagcagcgacgatgaatttgtttttgatcacagtagcgagacaacgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5565519 cagaaatttcctcaatcaaatatttcactaataataccttgacccataacagcagcagcgacgatgaatttgtttttgatcacagcagcgagacaacgaa 5565618  T
Q  116 gaatggaatagaggagagtgacgacgttgtgattgactgagatggtgacgggaatcagtggggatggcggagggcggttacaagaggagaggggagaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5565619 gaatggaatagaggagagtgacgacgttgtgattgactgagatggtgacgggaatcaatggggatggcggagggcggttacaagaggagaggggagaaga 5565718  T
Q  216 agattaaaaaagatggcgacggatatatgattaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatattt 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565719 agattaaaaaagatggcgacggatatctgattaatttattattctgtaaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatattt 5565818  T
Q  316 caaactcttcaaagccttccctttctctctgctcc 350  Q
    |||||||||||||||||||||||||||||| ||||    
T  5565819 caaactcttcaaagccttccctttctctctactcc 5565853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 30265302 - 30265241
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||||    
T  30265302 attaatttattattctctaaaaaattactctttcaaaaaatataaaagattttactattttt 30265241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14385218 - 14385278
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| ||||||||||   |||||||||||||||||||||||||||||||    
T  14385218 attaatttatcattctctaaaaaatcatcttttcaaaaaatgtgaaagattttactatttt 14385278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 30523415 - 30523474
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 304  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| ||||    
T  30523415 attaatttatcattctttaaaaaactactctttcaaaaaatgtgaaagattttaccattt 30523474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 345
Target Start/End: Original strand, 32951014 - 32951116
Alignment:
Q  245 attaatttattattctataaaaaa-tcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctttctc 342  Q
    |||||||||| ||||| ||||||| | ||||||| |||| |||||||||||||||| | |||  |||||||||| ||||||||||||||| || || |||    
T  32951014 attaatttatcattctctaaaaaagttactcttttaaaagatgtgaaagattttacaactttgctctatatttccaactcttcaaagcctacctttcctc 32951113  T
Q  343 tct 345  Q
    |||    
T  32951114 tct 32951116  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 8184068 - 8183984
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaa 328  Q
    |||||||||| ||||| |||||||| |||||||||||||||| |||||| ||||  ||||||  ||||||||| |||||| ||||    
T  8184068 attaatttatcattctctaaaaaattactctttcaaaaaatgcgaaagaatttatcatttttccctatatttccaactctccaaa 8183984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 33206925 - 33206985
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||  ||||| ||||||| ||||||||||||||||||||||||||| || |||||    
T  33206925 attaatttaacattctctaaaaaaacactctttcaaaaaatgtgaaagatttgaccatttt 33206985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 5002729 - 5002669
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    ||||||||||   ||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  5002729 attaatttatctctctttaaaaaatttctctttcaaaaaatgtaaaagattttactatttt 5002669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 15803310 - 15803361
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  15803310 attaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 15803361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 36030931 - 36030982
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||| |||||||  |||||||| |||||||||||||||||    
T  36030931 attaatttatcattctctaaaaaaatactctttccaaaaatgtgaaagattt 36030982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 16625742 - 16625697
Alignment:
Q  250 tttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  16625742 tttatcattctctaaaaaat-actctttcaaaaaatgtgaaagattt 16625697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 26618548 - 26618496
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    |||||||||| ||||| || ||||| ||| ||||||| |||||||||||||||    
T  26618548 attaatttatcattctttataaaattactgtttcaaataatgtgaaagatttt 26618496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 38325257 - 38325297
Alignment:
Q  258 tctataaaaaatcactctttc-aaaaaatgtgaaagatttt 297  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  38325257 tctaaaaaaaatcactctttcaaaaaaatgtgaaagatttt 38325297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 39913411 - 39913471
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| |||| ||||||||| | ||||| ||| ||| ||||||||||||| |||||    
T  39913411 attaatttatcattccataaaaaattagtctttaaaataatttgaaagattttaccatttt 39913471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 39925129 - 39925181
Alignment:
Q  248 aatttattattctataaaaaa-tcactctttcaaaaaatgtgaaagattttac 299  Q
    ||||||| ||||||||||||| | | ||| |||||||||||||||||||||||    
T  39925129 aatttatcattctataaaaaaattagtctctcaaaaaatgtgaaagattttac 39925181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 34749957 - 34749899
Alignment:
Q  246 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 304  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  34749957 ttaatttatcattctctaaaaaatcactctttcaaaaaatgtgaaagattttaccattt 34749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 718517 - 718464
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttta 298  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  718517 attaatttatcattctttaaaaaatcactctttcgaaaaatgtgaaagatttta 718464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 41432705 - 41432651
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac 299  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||    
T  41432705 attaatttattattctctaaaaaattactcttgcaaaaaacgtgaaagattttac 41432651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 30543306 - 30543245
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||| ||||||    
T  30543306 attaatttatcattctctaaaaaattattctttcaaaaaatgtaaaagattttaccattttt 30543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28848742 - 28848682
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| |||||||| ||||||| ||||| ||||||||||||||| |||||    
T  28848742 attaatttatcattctctaaaaaatgactctttaaaaaattgtgaaagattttacaatttt 28848682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 52073400 - 52073352
Alignment:
Q  246 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagat 294  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  52073400 ttaatttatcattctctaaaaaattactctttcaaaaaatgtgaaagat 52073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 50162271 - 50162345
Alignment:
Q  240 atatgattaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatat 313  Q
    |||| |||||||| | ||||| ||||||||  |||||||||||||| |||||||||||| |||||| ||||||||    
T  50162271 atattattaatttttcattctctaaaaaatttctctttcaaaaaatatgaaagattttattattttcttctatat 50162345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 23800486 - 23800546
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||| |||||    
T  23800486 attaatttatgattctctaaaaaattactcttttaaaaaatataaaagattttacaatttt 23800546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 23079916 - 23079975
Alignment:
Q  249 atttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttc 308  Q
    |||||| ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  23079916 atttatcattctctataaaatcactctctcaaaaaatttgaaatatttttctattttttc 23079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 33579391 - 33579450
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 304  Q
    |||||||||| ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||    
T  33579391 attaatttatcattctctaaaaaattactctttcaaaaattgtaaaagactttaccattt 33579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 43530241 - 43530190
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| | ||| ||||||| |||||||| ||||||||||||||||||    
T  43530241 attaatttatcactctctaaaaaaacactcttttaaaaaatgtgaaagattt 43530190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 51303118 - 51303067
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||| ||||||  |||||||| ||||||||||||||||||    
T  51303118 attaatttatcattctctaaaaatacactctttgaaaaaatgtgaaagattt 51303067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 33643810 - 33643848
Alignment:
Q  279 aaaaaatgtgaaagattttactattttt-tctatatttc 316  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  33643810 aaaaaatgtgaaagattttactatttttctctatatttc 33643848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 17556930 - 17556991
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||||||| | ||| ||| ||| |||||||| ||||||||||||||||||  ||||||||    
T  17556930 attaatttatcactctctaagaaaacactctttaaaaaaatgtgaaagatttctctattttt 17556991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 50097754 - 50097803
Alignment:
Q  247 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  50097754 taatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 50097803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 17416661 - 17416601
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| | ||| |||||||| |||||| |||||| ||||||||||| ||| |||||    
T  17416661 attaatttatcaatctctaaaaaattactcttacaaaaactgtgaaagattgtaccatttt 17416601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 39508906 - 39508958
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    |||||||||| ||||| |||||| |  ||||||| ||||||||||||||||||    
T  39508906 attaatttatgattctctaaaaatttgctctttccaaaaatgtgaaagatttt 39508958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 50084265 - 50084337
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttttt-ctatatttc 316  Q
    |||||||||| | ||| ||| ||| |||||||||||||||||||||| ||||  | ||||||| |||||||||    
T  50084265 attaatttatcactctttaagaaaacactctttcaaaaaatgtgaaaaatttctcaattttttcctatatttc 50084337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 7635 - 7541
Alignment:
Q  247 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttc 340  Q
    ||||||| |||||| ||||||   ||||||| ||||||||||||||||||  ||||||| |||||||||||| |||||||||| || ||||||||    
T  7635 taatttactattctctaaaaatatactctttgaaaaaatgtgaaagatttatctattttcttctatatttcacactcttcaaatccctccctttc 7541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 9021072 - 9021178
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttctct 343  Q
    |||||||||| || || |||||||| | ||||| ||||||||||||||||||||| |||||   ||||||||| ||| |||||||| |||||||| ||||    
T  9021072 attaatttatcatactctaaaaaattaatcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcctct 9021171  T
Q  344 ctgctcc 350  Q
    | |||||    
T  9021172 ccgctcc 9021178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 15451280 - 15451186
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||| ||| || |||| |||| ||||    
T  15451280 attaatttatcattatttaaaaaattactctttcaaaaaatgtgaaagattttaccatttttcactatatttctaaccctccaaaacctttcctt 15451186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 42777243 - 42777153
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatatttcaaactcttcaaagccttcc 335  Q
    |||||||||| ||||| ||  |||||| ||||| |||||||||||||| |||||| | |||||||||||||  ||| || |||||||||||    
T  42777243 attaatttatcattctctatcaaatcattctttaaaaaaatgtgaaagcttttaccactttttctatattttcaaccctccaaagccttcc 42777153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 24662686 - 24662630
Alignment:
Q  249 atttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||||    
T  24662686 atttatcattctctaaaaaattactctttcagaaaatgtgaaagattttaccatttt 24662630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 34236462 - 34236410
Alignment:
Q  263 aaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatattt 315  Q
    |||||||||||||||||||||||||||||||||||   |||||| ||||||||    
T  34236462 aaaaaatcactctttcaaaaaatgtgaaagattttgtcatttttcctatattt 34236410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 15498736 - 15498651
Alignment:
Q  246 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagcctt 333  Q
    ||||||||| ||| | |||||||| |||||||||||   ||||||||||||||| |||||| |||||||||| ||| ||||||| ||||    
T  15498736 ttaatttatcattatttaaaaaattactctttcaaa---tgtgaaagattttaccatttttctctatatttctaacccttcaaaacctt 15498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 42759589 - 42759535
Alignment:
Q  251 ttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  42759589 ttatcattctctaaaaatttactctttcaaaaaatgtgaaagattttacaatttt 42759535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 24682911 - 24682844
Alignment:
Q  274 ctttcaaaaaatgtgaaagattttactattttttc-tatatttcaaactcttcaaagccttccctttc 340  Q
    |||| ||||||| |||||||||||||||||||  | |||||||| ||| |||||||| ||||||||||    
T  24682911 ctttaaaaaaatatgaaagattttactattttcccttatatttccaacccttcaaagtcttccctttc 24682844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 13984916 - 13984867
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatt 295  Q
    |||||||||||| ||| |||||||| ||||||||||||||| |||||||||    
T  13984916 attaatttattactctctaaaaaat-actctttcaaaaaatatgaaagatt 13984867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 45022468 - 45022419
Alignment:
Q  257 ttctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||| |||||||  ||||||||||||||||||||||||||  ||||||||    
T  45022468 ttctctaaaaaaatactctttcaaaaaatgtgaaagatttctctattttt 45022419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 1132878 - 1132784
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||  |||||   ||||||||| ||| ||  |||||||||||||    
T  1132878 attaatttatcattctctaaaaaattactctttcaaaaaatgtgaaagattttataattttccactatatttccaaccctctaaagccttccctt 1132784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 32858968 - 32859061
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||   ||||||||| ||| || ||||||||||||||    
T  32858968 attaatttatcattctctaaaaatt-actctttcaaaaaatgtgaaagattttaccattttcccctatatttccaaccctccaaagccttccctt 32859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 15499242 - 15499149
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccct 337  Q
    |||| ||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||||| | |||||||| |||| | ||||| |||||||    
T  15499242 attattttatcattctctaaaaatttactatttcaaaaaatgtgaaagattttactatttttctatatatttccaactttccaaagtcttccct 15499149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 4247255 - 4247326
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatattt 315  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| ||||||||||||| |||||| |||||||||    
T  4247255 attaatttatcattctctaaaaaattactctttaaaaaaatatgaaagattttaccatttttctctatattt 4247326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 23568201 - 23568261
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| |||||| ||||| | | |||||||||||||| ||||||||||||||||||    
T  23568201 attaatttatcattctaaaaaaagttattctttcaaaaaatgcgaaagattttactatttt 23568261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 36598392 - 36598470
Alignment:
Q  256 attctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatatttcaaactcttcaaagccttc 334  Q
    ||||| |||||||  ||| ||||||||||||||||||||||||| ||||||   ||||||| ||| |||||||| ||||    
T  36598392 attctttaaaaaactactatttcaaaaaatgtgaaagattttaccatttttctcatatttccaacccttcaaagtcttc 36598470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 43273945 - 43274015
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttacta-ttttttctatatttc 316  Q
    |||||||||| ||||| |||||||| ||| ||  ||||||| ||||||||||||||| |||||||||||||||    
T  43273945 attaatttatcattctttaaaaaattactttt--aaaaaatatgaaagattttactatttttttctatatttc 43274015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 3334002 - 3334053
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||| |||||||  |||||| |||||||||||||||||||    
T  3334002 attaatttatcattctctaaaaaaatactcttccaaaaaatgtgaaagattt 3334053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 35283225 - 35283276
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| | |||| ||||||  ||||||||||||||||||||||||||    
T  35283225 attaatttatcactctaaaaaaaaatactctttcaaaaaatgtgaaagattt 35283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 53620359 - 53620410
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||| |||||||  |||||||||||||||||| |||||||    
T  53620359 attaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagattt 53620410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 2984029 - 2984090
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||| ||| ||||| |||||||| ||||||||||||||||  |||| |||||| ||||||    
T  2984029 attaatgtatcattctctaaaaaattactctttcaaaaaatggaaaagtttttaccattttt 2984090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 50201706 - 50201767
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||||||  ||||| |||||||  ||||||||||||| ||||||||||||| | ||||||    
T  50201706 attaatttaccattctctaaaaaaatactctttcaaaaattgtgaaagatttttcaattttt 50201767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 37457190 - 37457226
Alignment:
Q  271 actctttcaaaaaatgtgaaagattttactatttttt 307  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  37457190 actctttcaaaaaatgtgaaatattttaccatttttt 37457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 38401862 - 38401810
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    |||| ||||| | ||| ||||||| |||||||| |||||||||||||||||||    
T  38401862 attagtttatcactctttaaaaaaacactcttttaaaaaatgtgaaagatttt 38401810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 54089380 - 54089336
Alignment:
Q  262 taaaaaatcactctttcaaaaaatgtgaaagattttactattttt 306  Q
    |||||||| ||||||||||||||| ||||| ||||||| ||||||    
T  54089380 taaaaaattactctttcaaaaaatttgaaacattttaccattttt 54089336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 37388418 - 37388477
Alignment:
Q  246 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    ||||||||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  37388418 ttaatttatcattctctaaaaatttactctttcaaaaaatgtgaaagattttaccatttt 37388477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 3394099 - 3394159
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| | |||||| |||||||||||||||||| |||||||||| |||||    
T  3394099 attaatttatcattctcttaaaaattactctttcaaaaaatgtgcaagattttaccatttt 3394159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 13258624 - 13258675
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||||    
T  13258624 attaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagattt 13258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 13537480 - 13537550
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac--tattttttctatat 313  Q
    |||||||||||||||| |||||||| ||||||||||||||  | |||||||||||  |||||||| |||||    
T  13537480 attaatttattattctctaaaaaattactctttcaaaaaaattaaaagattttaccatattttttttatat 13537550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 13627028 - 13627098
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac--tattttttctatat 313  Q
    |||||||||||||||| |||||||| ||||||||||||||  | |||||||||||  |||||||| |||||    
T  13627028 attaatttattattctctaaaaaattactctttcaaaaaaattaaaagattttaccatattttttttatat 13627098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 1839763 - 1839712
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  1839763 attaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 1839712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 5941220 - 5941255
Alignment:
Q  263 aaaaaatcactctttcaaaaaatgtgaaagatttta 298  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5941220 aaaaaattactctttcaaaaaatgtgaaagatttta 5941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 15108206 - 15108155
Alignment:
Q  246 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    ||||||||| ||||| |||||||| | ||||||||||||| |||||||||||    
T  15108206 ttaatttatcattctctaaaaaattattctttcaaaaaatatgaaagatttt 15108155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 4429587 - 4429621
Alignment:
Q  271 actctttcaaaaaatgtgaaagattttactatttt 305  Q
    ||||||||||||||||||||||||||||| |||||    
T  4429587 actctttcaaaaaatgtgaaagattttaccatttt 4429621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 39194069 - 39194121
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaa-tgtgaaagattt 296  Q
    |||| ||||| ||||| ||||||| ||||||||||||||| ||||||||||||    
T  39194069 attagtttatcattctctaaaaaaacactctttcaaaaaagtgtgaaagattt 39194121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 2561256 - 2561311
Alignment:
Q  262 taaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttc 316  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  2561256 taaaaaatcactctttcaaaaaatgtgaaagaatttaccatttttctctatatttc 2561311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 19389771 - 19389711
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| |||||||| | ||||||||||| ||||||||||||||| |||||    
T  19389771 attaatttatcattctctaaaaaattaatctttcaaaaattgtgaaagattttaccatttt 19389711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 28523756 - 28523808
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||||||    
T  28523756 attaatttatcattctttaaaaaatcattctttcaaaaaatatgaaagatttt 28523808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 17668077 - 17668026
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  17668077 attaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagattt 17668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 9684734 - 9684640
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||| | |||||||| |||||||||||||||||| |||||||| | |||||   ||||||||| ||| || | ||||||||||||    
T  9684734 attaatttatcattttctaaaaaattactctttcaaaaaatgtggaagattttcccattttcccctatatttccaaccctcctaagccttccctt 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 7398724 - 7398639
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaag 329  Q
    |||||||||| ||||| |||||||| | |||| |||||||||||||   |||||| ||||| | ||||||||| ||||||||||||    
T  7398724 attaatttatcattctctaaaaaattagtcttacaaaaaatgtgaatttttttaccattttctcctatatttccaactcttcaaag 7398639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 3924799 - 3924751
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaaga 293  Q
    |||||||||| ||||| |||||||| |||||| ||||||||||||||||    
T  3924799 attaatttatcattctctaaaaaattactcttccaaaaaatgtgaaaga 3924751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 33682510 - 33682582
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttc 316  Q
    |||||||| | ||| | |||||||| ||||| | ||||||||||||||||||||| ||||| |||||||||||    
T  33682510 attaatttttcattttctaaaaaattactctataaaaaaatgtgaaagattttaccattttcttctatatttc 33682582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 35042342 - 35042402
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||| ||||||||   ||||||||||||| ||||||||||||| |||||    
T  35042342 attaatttatcattctctaaaaaatttatctttcaaaaaatatgaaagattttaccatttt 35042402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 4841652 - 4841601
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    |||||||||| | |||||||||||  ||||||| ||||||||||||||||||    
T  4841652 attaatttatcactctataaaaaaatactctttaaaaaaatgtgaaagattt 4841601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 35704752 - 35704822
Alignment:
Q  247 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttttt-ctatatttc 316  Q
    |||||||| ||||| |||||||  ||  ||||||||||||||||||||||  ||||||||| |||||||||    
T  35704752 taatttatcattctctaaaaaaatacattttcaaaaaatgtgaaagatttctctattttttcctatatttc 35704822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 6816378 - 6816455
Alignment:
Q  262 taaaaaatcactctttcaaaaaatgtgaaagattttactattttttc-tatatttcaaactcttcaaagccttccctt 338  Q
    |||||||  ||||||||||||||||||||||||||||  ||||| || |||||||| ||| ||  ||||| |||||||    
T  6816378 taaaaaacgactctttcaaaaaatgtgaaagattttagcattttgtcttatatttccaaccctcgaaagcattccctt 6816455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 31632976 - 31633024
Alignment:
Q  249 atttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 297  Q
    |||||| ||||| || ||||  |||||||||||||||||||||||||||    
T  31632976 atttatcattctctacaaaaatactctttcaaaaaatgtgaaagatttt 31633024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 43496646 - 43496690
Alignment:
Q  263 aaaaaatcactctttcaaaaaatgtgaaagattttactatttttt 307  Q
    |||||||  |||||||||||||| ||||||||||| |||||||||    
T  43496646 aaaaaattgctctttcaaaaaatatgaaagatttttctatttttt 43496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 23465943 - 23465849
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||||| |||||||  | ||||| ||||||||||||||||||||| |||||   ||||||||| ||| |||||||| ||||||||    
T  23465943 attaatttatcattctctaaaaaactattcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttccctt 23465849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14676368 - 14676428
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||| ||||  |||||||| |||||||||||||||||||||||||| || |||||    
T  14676368 attaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagatttgaccatttt 14676428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 45510480 - 45510574
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactat-tttttctatatttcaaactcttcaaagccttccctt 338  Q
    |||||||||| ||||| |||||||| ||||||||| |||||||||||  |||||| || ||   ||||||||| ||| || ||||||||||||||    
T  45510480 attaatttatcattctctaaaaaattactctttcacaaaatgtgaaaatttttacgatcttccactatatttccaaccctccaaagccttccctt 45510574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 46303389 - 46303437
Alignment:
Q  248 aatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 296  Q
    ||||||| ||||| ||||||| |||||||||||||||| ||||||||||    
T  46303389 aatttatcattctttaaaaaaacactctttcaaaaaatatgaaagattt 46303437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 42593070 - 42592999
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactat-tttttctatattt 315  Q
    ||||||||||||| ||||||||||| ||  ||||||||||  ||||||||||||| || ||| |||||||||    
T  42593070 attaatttattatgctataaaaaattacattttcaaaaaacatgaaagattttaccatctttctctatattt 42592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 38138069 - 38138119
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatt 295  Q
    |||||||||| ||||| |||||||  ||||| |||||||||||||||||||    
T  38138069 attaatttatcattctctaaaaaaatactctatcaaaaaatgtgaaagatt 38138119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 24923337 - 24923297
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaat 285  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  24923337 attaatttatcattctctaaaaaaccactctttcaaaaaat 24923297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 42112902 - 42112850
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaa-aaatgtgaaagattt 296  Q
    |||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  42112902 attagtttatcattctctaaaaaaacactctttcaaagaaatgtgaaagattt 42112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 16329517 - 16329602
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaag 329  Q
    |||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||  ||||| | ||||||||| ||| ||||||||    
T  16329517 attaatttatcattctctaaaaaattattctttcaaaaaatgtaaaagattttatcattttctcctatatttccaacccttcaaag 16329602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 13120365 - 13120301
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaa-aaaatgtgaaagattttactattttttc 308  Q
    |||||||||| ||||| |||||||| |||||||||| ||||||| |||||||||  |||||||||    
T  13120365 attaatttatcattctctaaaaaattactctttcaaaaaaatgtaaaagatttttttattttttc 13120301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 34557116 - 34557024
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccc 336  Q
    |||||||||  ||||| |||||| | | |||||||||  |||||||||||||||| ||||| | ||||||||| |||||| ||||| ||||||    
T  34557116 attaatttaccattctctaaaaagttattctttcaaactatgtgaaagattttaccattttctcctatatttccaactctccaaagtcttccc 34557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 547 - 487
Alignment:
Q  245 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 305  Q
    |||||||||  ||||| |||||| | ||||||||||||||||||||| ||||||| |||||    
T  547 attaatttaacattctctaaaaatttactctttcaaaaaatgtgaaatattttaccatttt 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 250309 - 250353
Alignment:
Q  120 ggaatagaggagagtgacgacgttgtgattgactgagatggtgac 164  Q
    ||||||| ||||||| ||| ||||||||||| |||||||||||||    
T  250309 ggaataggggagagttacggcgttgtgattggctgagatggtgac 250353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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