View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5409_low_6 (Length: 315)
Name: NF5409_low_6
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5409_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 47391398 - 47391114
Alignment:
| Q |
19 |
tctcggagatggagaatgctttgagaaaagctagtggtcaagtggaccgtgcaaatggagctgtgagaagattagagactgagaatgctgaaatcagagc |
118 |
Q |
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| T |
47391398 |
tctcggagatggagaatgctttgagaaaggctagtggtcaagtggaccgtgcaaatggagctgtgagaagattagagactgagaatgctgaaatcagagc |
47391299 |
T |
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| Q |
119 |
agagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgg |
218 |
Q |
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| T |
47391298 |
agagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgg |
47391199 |
T |
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| Q |
219 |
gaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaat |
303 |
Q |
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| T |
47391198 |
gaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaat |
47391114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 40624732 - 40625015
Alignment:
| Q |
19 |
tctcggagatggagaatgctttgagaaaagctagtggtcaagtggaccgtgcaaatggagctgtgagaagattagagactgagaatgctgaaatcagagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624732 |
tctcggagatggagaatgctttgagaaaagctagtggtcaagtggaccgtgcaaatggagctgtgagaagattagagactgagaatgctgaaatcagagc |
40624831 |
T |
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| Q |
119 |
agagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
40624832 |
agagatggaggcctccaaattaagtgcatcagagtcagtgacagcttgcttggaagttgcaaaaaaggagaaaaaatacttgaagaaacttctagcttgg |
40624931 |
T |
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| Q |
219 |
gaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaat |
303 |
Q |
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||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40624932 |
gaaaa-acagaaagctaagctgcaaaaggagatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaat |
40625015 |
T |
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