View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5409_low_8 (Length: 245)
Name: NF5409_low_8
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5409_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 19496160 - 19496342
Alignment:
| Q |
22 |
atagtttcgatacaaagcagattcaagatggctggtgaacccaacacgagtatcatggcctcgaaagttgataaatacatcatattttttatgaggcact |
121 |
Q |
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| T |
19496160 |
atagtttcgacacaaagcagattcaagatggctggtgaacccaacacgagtatcatggcctcgaaagttgataaatacatcatattttttatgaggcact |
19496259 |
T |
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| Q |
122 |
gtagcagcaacagggcgagaggaagaagttgccataaccgtagccatgtgtgttttctggttcttagatataaaatgcgggat |
204 |
Q |
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| T |
19496260 |
gtagcagcaacagggcgagaggaagaagttgccataaccgtagccatttgtgttttctggttcttagatataaaatgcgggat |
19496342 |
T |
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