View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5409_low_9 (Length: 235)

Name: NF5409_low_9
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5409_low_9
NF5409_low_9
[»] chr2 (1 HSPs)
chr2 (1-216)||(19495944-19496159)
[»] scaffold0363 (1 HSPs)
scaffold0363 (52-161)||(15499-15608)
[»] chr8 (9 HSPs)
chr8 (60-161)||(13164380-13164481)
chr8 (52-161)||(14403245-14403354)
chr8 (52-158)||(5568675-5568781)
chr8 (52-153)||(5562348-5562449)
chr8 (52-160)||(5624537-5624645)
chr8 (52-159)||(5598440-5598547)
chr8 (52-159)||(5636728-5636835)
chr8 (124-218)||(12190405-12190502)
chr8 (124-218)||(12434833-12434930)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19496159 - 19495944
Alignment:
Q  1 ttctggacctacacagactaccgcatcaaaagtggaaaaaatatttgggacgaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttct 100  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19496159 ttcttgacctacacagactaccgcatcaaaagtggaaaaaaaatctgggacgaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttct 19496060  T
Q  101 cagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtggacaggttgttgttcttcctgtgttcta 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  19496059 cagagaactacgcggattccagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtagacaagttgttgttcttcctgtgttcta 19495960  T
Q  201 ccgtattgatccttca 216  Q
    ||||||||| ||||||    
T  19495959 ccgtattgaaccttca 19495944  T

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Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 15608 - 15499
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  15608 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 15509  T
Q  152 tgaagtgtag 161  Q
    || |||||||    
T  15508 tggagtgtag 15499  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 13164380 - 13164481
Alignment:
Q  60 gaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgt 159  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||   ||| |  ||||||||| | ||||| ||| |||||||| |||||    
T  13164380 gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt 13164479  T
Q  160 ag 161  Q
    ||    
T  13164480 ag 13164481  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 14403245 - 14403354
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  14403245 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 14403344  T
Q  152 tgaagtgtag 161  Q
    || |||||||    
T  14403345 tggagtgtag 14403354  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 5568675 - 5568781
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| |||||||||||||| |||    
T  5568675 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaa 5568774  T
Q  152 tgaagtg 158  Q
    || ||||    
T  5568775 tggagtg 5568781  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 5562348 - 5562449
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    ||||||||||| ||||||||  |||| ||| | ||||| || |||||||| ||||||||||||  ||| |  ||||||||| ||||||| ||| ||||||    
T  5562348 gaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataa 5562447  T
Q  152 tg 153  Q
    ||    
T  5562448 tg 5562449  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 5624537 - 5624645
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    ||||||||||||||||| ||  |||| ||||| | ||| ||||||||||| ||||||||||||   || |  ||||||||| | ||||| ||| ||||||    
T  5624537 gaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataa 5624636  T
Q  152 tgaagtgta 160  Q
    || ||||||    
T  5624637 tggagtgta 5624645  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 5598547 - 5598440
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5598547 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5598448  T
Q  152 tgaagtgt 159  Q
    || |||||    
T  5598447 tggagtgt 5598440  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 5636728 - 5636835
Alignment:
Q  52 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 151  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5636728 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5636827  T
Q  152 tgaagtgt 159  Q
    || |||||    
T  5636828 tggagtgt 5636835  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 12190502 - 12190405
Alignment:
Q  124 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca 218  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || ||||||||    
T  12190502 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca 12190405  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 12434930 - 12434833
Alignment:
Q  124 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca 218  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || ||||||||    
T  12434930 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca 12434833  T

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