View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410-Insertion-1 (Length: 1038)

Name: NF5410-Insertion-1
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410-Insertion-1
NF5410-Insertion-1
[»] chr5 (23 HSPs)
chr5 (8-626)||(3887573-3888199)
chr5 (645-1038)||(3887151-3887549)
chr5 (901-1038)||(2474315-2474457)
chr5 (901-1038)||(22556446-22556588)
chr5 (901-1038)||(3886695-3886837)
chr5 (901-1038)||(2473869-2474011)
chr5 (922-1038)||(22975104-22975224)
chr5 (920-1038)||(22556899-22557021)
chr5 (902-1038)||(1821817-1821958)
chr5 (973-1038)||(189053-189120)
chr5 (561-626)||(29173539-29173604)
chr5 (581-627)||(22020823-22020869)
chr5 (561-620)||(12883889-12883948)
chr5 (961-1031)||(30684658-30684729)
chr5 (580-626)||(4793042-4793088)
chr5 (580-626)||(14804632-14804678)
chr5 (561-627)||(16773856-16773922)
chr5 (561-627)||(17028225-17028291)
chr5 (561-627)||(29075830-29075896)
chr5 (900-944)||(188989-189034)
chr5 (971-1016)||(20039591-20039636)
chr5 (582-619)||(26221274-26221311)
chr5 (561-626)||(29210407-29210472)
[»] chr4 (26 HSPs)
chr4 (901-1030)||(35871538-35871671)
chr4 (900-1027)||(23350383-23350514)
chr4 (901-1029)||(44471423-44471555)
chr4 (901-1016)||(15306208-15306326)
chr4 (901-1010)||(44470991-44471099)
chr4 (971-1029)||(33987169-33987227)
chr4 (900-1012)||(49998545-49998661)
chr4 (561-620)||(13015476-13015535)
chr4 (971-1014)||(17028858-17028901)
chr4 (561-620)||(39509119-39509178)
chr4 (923-1016)||(14572261-14572357)
chr4 (561-627)||(7949415-7949481)
chr4 (561-627)||(30938180-30938246)
chr4 (972-1038)||(9423946-9424013)
chr4 (561-620)||(9936929-9936988)
chr4 (901-1004)||(27578577-27578683)
chr4 (580-627)||(47386752-47386799)
chr4 (580-627)||(49262645-49262692)
chr4 (562-620)||(4185143-4185201)
chr4 (561-627)||(8030165-8030231)
chr4 (577-627)||(26356882-26356932)
chr4 (564-626)||(37443751-37443813)
chr4 (561-627)||(51954163-51954229)
chr4 (562-627)||(4688613-4688678)
chr4 (972-1029)||(14351780-14351837)
chr4 (773-854)||(37781937-37782017)
[»] chr7 (20 HSPs)
chr7 (901-1038)||(11517482-11517624)
chr7 (901-1029)||(9124869-9125001)
chr7 (899-1038)||(13125230-13125374)
chr7 (901-1038)||(42515002-42515144)
chr7 (900-1031)||(18833195-18833330)
chr7 (920-1038)||(13124795-13124917)
chr7 (924-1038)||(2941851-2941969)
chr7 (561-620)||(42712007-42712066)
chr7 (580-627)||(45228986-45229033)
chr7 (561-627)||(7309405-7309470)
chr7 (561-627)||(21558177-21558243)
chr7 (561-627)||(37473663-37473729)
chr7 (561-626)||(5934170-5934235)
chr7 (982-1030)||(679812-679860)
chr7 (567-626)||(3174982-3175041)
chr7 (561-627)||(2446357-2446423)
chr7 (561-627)||(17040973-17041039)
chr7 (561-627)||(22035447-22035513)
chr7 (580-626)||(41975955-41976001)
chr7 (972-1029)||(6747702-6747759)
[»] chr8 (25 HSPs)
chr8 (901-1029)||(34309043-34309175)
chr8 (901-1029)||(34308583-34308715)
chr8 (901-1030)||(25144682-25144815)
chr8 (896-1038)||(12100597-12100743)
chr8 (901-1012)||(25147446-25147561)
chr8 (920-1030)||(25147897-25148010)
chr8 (901-1029)||(21316213-21316345)
chr8 (901-944)||(31283388-31283432)
chr8 (561-626)||(968411-968476)
chr8 (562-627)||(7347887-7347952)
chr8 (901-1014)||(9250913-9251029)
chr8 (577-626)||(28560671-28560720)
chr8 (561-626)||(31408084-31408149)
chr8 (992-1038)||(17103086-17103133)
chr8 (561-627)||(6536569-6536635)
chr8 (581-627)||(8485068-8485114)
chr8 (580-626)||(11492035-11492081)
chr8 (561-627)||(11819825-11819891)
chr8 (561-619)||(11942502-11942560)
chr8 (561-619)||(15948018-15948076)
chr8 (561-627)||(18546323-18546389)
chr8 (900-983)||(22705089-22705174)
chr8 (982-1016)||(22840646-22840680)
chr8 (983-1029)||(28453334-28453380)
chr8 (579-620)||(3129832-3129873)
[»] chr2 (15 HSPs)
chr2 (901-1038)||(30966144-30966286)
chr2 (901-1038)||(30966600-30966742)
chr2 (901-1038)||(29259714-29259856)
chr2 (901-1038)||(24818236-24818378)
chr2 (901-1030)||(5399920-5400053)
chr2 (922-1029)||(82952-83059)
chr2 (580-627)||(42222949-42222996)
chr2 (981-1038)||(1953149-1953207)
chr2 (982-1038)||(25338091-25338148)
chr2 (581-626)||(41504898-41504943)
chr2 (982-1017)||(1912520-1912555)
chr2 (972-1030)||(33174943-33175001)
chr2 (561-627)||(33582022-33582088)
chr2 (561-626)||(27244357-27244422)
chr2 (580-625)||(37971963-37972008)
[»] scaffold0024 (1 HSPs)
scaffold0024 (901-1031)||(105630-105764)
[»] scaffold0007 (1 HSPs)
scaffold0007 (900-1030)||(142377-142511)
[»] chr3 (24 HSPs)
chr3 (898-1020)||(32388844-32388970)
chr3 (901-1038)||(31284370-31284512)
chr3 (904-1038)||(41472214-41472353)
chr3 (901-1038)||(12820554-12820696)
chr3 (901-1029)||(41473907-41474039)
chr3 (926-1030)||(8067216-8067323)
chr3 (901-1038)||(25248021-25248163)
chr3 (561-611)||(36720430-36720480)
chr3 (561-627)||(44743816-44743882)
chr3 (924-1016)||(27187447-27187542)
chr3 (901-1038)||(7477102-7477243)
chr3 (901-1038)||(7493792-7493933)
chr3 (561-627)||(8075088-8075154)
chr3 (561-619)||(25035754-25035812)
chr3 (561-627)||(47454578-47454644)
chr3 (561-627)||(52769944-52770010)
chr3 (561-620)||(33861702-33861761)
chr3 (565-627)||(2667915-2667977)
chr3 (561-611)||(14186696-14186746)
chr3 (982-1016)||(30529682-30529716)
chr3 (671-732)||(41163322-41163384)
chr3 (561-627)||(51903839-51903905)
chr3 (982-1038)||(28561741-28561798)
chr3 (982-1038)||(39653159-39653216)
[»] scaffold0022 (1 HSPs)
scaffold0022 (901-1038)||(162772-162914)
[»] chr6 (24 HSPs)
chr6 (901-1038)||(13492699-13492841)
chr6 (901-1016)||(16519879-16519997)
chr6 (920-1038)||(17731207-17731329)
chr6 (900-1016)||(9351972-9352091)
chr6 (920-1038)||(7912240-7912362)
chr6 (924-1038)||(13490055-13490173)
chr6 (901-1012)||(13191634-13191749)
chr6 (924-1038)||(7911812-7911930)
chr6 (981-1030)||(9440531-9440580)
chr6 (567-626)||(12234469-12234528)
chr6 (580-626)||(3715520-3715566)
chr6 (986-1031)||(9440411-9440456)
chr6 (578-626)||(1992209-1992257)
chr6 (560-627)||(8597708-8597775)
chr6 (561-608)||(9626081-9626128)
chr6 (972-1038)||(17850903-17850970)
chr6 (580-627)||(18263908-18263955)
chr6 (577-627)||(12633074-12633124)
chr6 (981-1038)||(17027625-17027683)
chr6 (580-626)||(32250812-32250858)
chr6 (982-1031)||(27334156-27334205)
chr6 (982-1031)||(27394896-27394945)
chr6 (775-856)||(31418955-31419035)
chr6 (577-618)||(33456623-33456664)
[»] scaffold0020 (1 HSPs)
scaffold0020 (901-1038)||(107557-107699)
[»] scaffold0018 (1 HSPs)
scaffold0018 (901-1038)||(10210-10352)
[»] chr1 (20 HSPs)
chr1 (901-1038)||(35759702-35759844)
chr1 (903-1038)||(35761008-35761148)
chr1 (901-1038)||(2328225-2328367)
chr1 (920-1038)||(20061285-20061407)
chr1 (561-627)||(17745218-17745283)
chr1 (561-626)||(3799955-3800020)
chr1 (923-1030)||(46693839-46693950)
chr1 (972-1038)||(2634909-2634976)
chr1 (561-608)||(17439966-17440013)
chr1 (561-627)||(12587319-12587384)
chr1 (561-619)||(24047071-24047129)
chr1 (659-734)||(6628716-6628792)
chr1 (564-627)||(2220024-2220087)
chr1 (565-620)||(40814376-40814431)
chr1 (561-627)||(6122843-6122909)
chr1 (561-627)||(16893443-16893509)
chr1 (580-626)||(44961833-44961879)
chr1 (561-626)||(42949254-42949319)
chr1 (986-1038)||(50003169-50003222)
chr1 (561-626)||(50901631-50901695)
[»] scaffold0322 (2 HSPs)
scaffold0322 (920-1038)||(18215-18337)
scaffold0322 (981-1038)||(18960-19018)
[»] scaffold0040 (2 HSPs)
scaffold0040 (901-1030)||(2313-2446)
scaffold0040 (900-951)||(2555-2607)
[»] scaffold0005 (1 HSPs)
scaffold0005 (923-1016)||(245019-245115)
[»] scaffold0008 (1 HSPs)
scaffold0008 (561-619)||(49355-49413)
[»] scaffold0074 (1 HSPs)
scaffold0074 (562-619)||(45728-45785)
[»] scaffold0047 (1 HSPs)
scaffold0047 (982-1029)||(18238-18285)
[»] scaffold0258 (1 HSPs)
scaffold0258 (561-627)||(15284-15350)
[»] scaffold0368 (1 HSPs)
scaffold0368 (561-626)||(14927-14992)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 626
Target Start/End: Complemental strand, 3888199 - 3887573
Alignment:
Q  8 cgtaccaatacttaagtacaccgttcttcttgctccttttctatttttaaacaaaagatggctcgtttgatgggagcactcaatgtctaaagtatggtat 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3888199 cgtactaatacttaagtacaccgttcttcttgctccttttctatttttaaacaaaagatggctcgtttgatgggagcactcaatgcctaaagtatggtat 3888100  T
Q  108 tcattgattaacaacttaaaaccaatacaacactgtcaaagcagcaataaccaaagataaaaacgataactaagtggtgtggttaacctcacactttgtg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3888099 tcattgattaacaacttaaaaccaatacaacactgtcaaagcagcaataaccaaagaaaaaaacgataactaagtggtgtggttaacctcacactttgtg 3888000  T
Q  208 taatttaatatgggaaataataaattttgaaataaaagaggccattcctcacacttaatcttggccttttgttacttactttcttagttagtaacactct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  3887999 taatttaatatgggaaataataaattttgaaataaaagaggccattcctcacacttaatcttggccttttgttacttactttcttagttagtaaca--ct 3887902  T
Q  308 acattacaagccaatagctgtttcttttaatgatcnnnnnnngttgttcttgttgttgcgtcagtagtcattatatctttgttccctattgagtttactt 407  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3887901 acattacaagccaatagctgtttcttttaatgatctttttttgttgttcttgttgttgcgtcagtagtcattatatctttgttccctattgagtttactt 3887802  T
Q  408 ttgggttattttacacttaatt-aaaaaactgtacaataaatgaagtttaataatcttgttgcgaattggaacttaaatcacacc---------aaatat 497  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||         ||||||    
T  3887801 ttgggttattttacacttaattaaaaaaactgtacaataaattaagtttaataattttgttgcgaattcgaacttaaatcacaccaataaacttaaatat 3887702  T
Q  498 atagagtaagtattattgaaaaccaaacttatagacagactcaaacaataataacaacaaaacctcctcctcgaggttacatgttcgattctctccagtg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||     
T  3887701 atagagtaagtattattgaaaaccaaacttatagacagactcaaacaataataacaacaaaacctcctcctcgaggtcatatgtttgattctctccagtt 3887602  T
Q  598 tcaatttaggtgggttaatttagattctt 626  Q
     ||||||||||||||||||||||||||||    
T  3887601 ccaatttaggtgggttaatttagattctt 3887573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 645 - 1038
Target Start/End: Complemental strand, 3887549 - 3887151
Alignment:
Q  645 cctaacaactaagtgcaaaataaatccacaagcataatcaaagaacatggataagagagtagagaaacaacacaccaatgtttgtttatcaatttggcca 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3887549 cctaacaactaagtgcaaaataaatccacaagcataatcaaagaacctggataagagagtagagaaacaacacaccaatgtttgtttatcaatttggcca 3887450  T
Q  745 aatatgacatacatttaggaaagaaaagagtgatacaaagaggttacaataaattagattgaagatctctcaaagaacaatccttaatttttatcaattt 844  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3887449 aatatgacatacatctaggaaagaaaagagtgatgcaaagaggttacaataaattagattgaagatctctcgaagaacaatccttaatttttatcaattt 3887350  T
Q  845 ttcatgtcactctacgcacaatgagatcataaaagaaatcaaaagagaaagttttgtgtaacgcctccgcttggt-ggcatgtaacgcccgaggctgatg 943  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3887349 ttcatgtcactctacgcacaatgagatcataaaagaaatcaaaagagaaagttttgtgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatg 3887250  T
Q  944 aaggc-gggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    | ||| |||||| |||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  3887249 agggcggggagtggtccagctcctggcatgcttttaggcaaaactgaatcacatcggaatgagagtgatcctgaggccgtacaggtatgggactgcatg 3887151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 2474315 - 2474457
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || | ||||||||||||||||||| ||| |||||||||||||    
T  2474315 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccgactcctggcatgcttctaggaaaaactgaatcacatcg 2474414  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||| ||||||||||| ||| ||||||||||    
T  2474415 gaatgagagagatcctaaggtcgtacagatatgggactgcatg 2474457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 22556446 - 22556588
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||    
T  22556446 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctaatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatcg 22556545  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| | |||||||| ||| ||||||| ||||||||||    
T  22556546 gaatgagagggttcctgaggccgtgcaggtatgggactgcatg 22556588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 3886837 - 3886695
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg--agtgtctggctcctggcatgcttctaggcaaact-gaatcacatcg 996  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||  |  ||| ||||||| ||||||||||||| ||| | |||||||||||    
T  3886837 tgtaacacctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggaatggtccggctcctagcatgcttctaggaaaaattgaatcacatcg 3886738  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||    
T  3886737 gaatgagagggatcctgaggtcgtacaagtatgggactgcatg 3886695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 2473869 - 2474011
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| |||||| |||| || | |||||||||||||| |||| ||| |||||||||||||    
T  2473869 tgtaacacctccgcttggtgggcatgtaacgcccgaagctgatgagggcggggagtggtccgactcctggcatgcttttaggaaaaactgaatcacatcg 2473968  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||| |||||| |||||||||||| ||| |||||||||    
T  2473969 gaatgagagggatcctaaggtcgtacaggcatgagactgcatg 2474011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 922 - 1038
Target Start/End: Complemental strand, 22975224 - 22975104
Alignment:
Q  922 catgtaacgcccgaggctgatgaaggcg-ggagtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgaggtc 1018  Q
    ||||||||||||||||||||||| |||| |||||| ||  |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |    
T  22975224 catgtaacgcccgaggctgatgagggcgaggagtggtccagctcttggcatgcttctaggcaaaactgaatcacatcggaatgagagggatcctgaggcc 22975125  T
Q  1019 gtacaggtatg-gactgcatg 1038  Q
    || |||||||| |||||||||    
T  22975124 gtgcaggtatgtgactgcatg 22975104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 920 - 1038
Target Start/End: Original strand, 22556899 - 22557021
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||| |||||| |||||||||||||||||||||| | || |||||    
T  22556899 ggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttcttggcaaaactgaatcacatcggaatgagagagttcatgagg 22556998  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
     ||| ||||||| ||||||||||    
T  22556999 ccgtgcaggtatgggactgcatg 22557021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 902 - 1038
Target Start/End: Original strand, 1821817 - 1821958
Alignment:
Q  902 gtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcgg 997  Q
    |||| ||||| ||||||||| ||||||||| | |||||||| || || ||| |||| || ||||| ||||||||||||||||||| | |||| |||||||    
T  1821817 gtaatgcctctgcttggtgggcatgtaacgtctgaggctgacgagggtggggagtggtccggctcatggcatgcttctaggcaaagttgaattacatcgg 1821916  T
Q  998 aatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    |||||||| |||| | ||||||| |||||||| |||||||||    
T  1821917 aatgagagagatcttaaggtcgtgcaggtatgagactgcatg 1821958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 973 - 1038
Target Start/End: Original strand, 189053 - 189120
Alignment:
Q  973 ttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  189053 ttctaggcaaaactgaatcacatcggaatgagagggatcctgaggccgtacatgtatgggactgcatg 189120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 29173539 - 29173604
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||| || |||||||| ||||  ||||||||||||||||| |||||||| |||||    
T  29173539 ctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttctt 29173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 581 - 627
Target Start/End: Complemental strand, 22020869 - 22020823
Alignment:
Q  581 ttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||    
T  22020869 ttcgattctctccagtgttaatttaggtgggctaatttagtttcttc 22020823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 12883889 - 12883948
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    |||||||| |||||  ||||||| |||||||||| | ||||||| |||||||||||||||    
T  12883889 ctcctccttgaggtctcatgttcaattctctccaatatcaattttggtgggttaatttag 12883948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 961 - 1031
Target Start/End: Complemental strand, 30684729 - 30684658
Alignment:
Q  961 ctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    |||||||||||||| |||||||| |  ||||||||||||||||| | ||||||||||| || || |||||||    
T  30684729 ctcctggcatgcttataggcaaaaccaaatcacatcggaatgagggggatcctgaggttgtgcaagtatgga 30684658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Complemental strand, 4793088 - 4793042
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  4793088 gttcgattctccccagtgccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Complemental strand, 14804678 - 14804632
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||||||||| ||| | |||||||||||||||| |||||    
T  14804678 gttcgattctctccagtgccaactcaggtgggttaatttagtttctt 14804632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 16773856 - 16773922
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||||||||   || ||||||||||||| |||||||| ||||||    
T  16773856 ctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 17028291 - 17028225
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || ||| ||||| ||| |||||||||||||||||| |||||||| ||||||    
T  17028291 ctcctcctcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaatttagcttcttc 17028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 29075830 - 29075896
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||| |  ||||||||||||||||  ||| |||||||| |||| |||||||| ||||||    
T  29075830 ctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttcttc 29075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 900 - 944
Target Start/End: Original strand, 188989 - 189034
Alignment:
Q  900 gtgtaacgcctccgcttggt-ggcatgtaacgcccgaggctgatga 944  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||    
T  188989 gtgtaacgcctccgcttggtgggcatataacacccgaggctgatga 189034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 971 - 1016
Target Start/End: Complemental strand, 20039636 - 20039591
Alignment:
Q  971 gcttctaggcaaactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||| ||||| |||||||||||||||||||| |||| |||||    
T  20039636 gcttctagacaaaccgaatcacatcggaatgagagggatcatgagg 20039591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 582 - 619
Target Start/End: Original strand, 26221274 - 26221311
Alignment:
Q  582 tcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  26221274 tcgattctctccgatgtcaatttaggtgggttaattta 26221311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 29210407 - 29210472
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||| || |||| ||||||||  || |||||||||||||  |||||||| |||||    
T  29210407 ctcctcctcgaggtttcaagttcaattctctctggtatcaatttaggtggactaatttagcttctt 29210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 901 - 1030
Target Start/End: Original strand, 35871538 - 35871671
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||    
T  35871538 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatcg 35871637  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||||| |||||||||| |||||||||||||    
T  35871638 gaatgagagggatcctgaggccgtacaggtatgg 35871671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 900 - 1027
Target Start/End: Complemental strand, 23350514 - 23350383
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatc 995  Q
    |||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||    
T  23350514 gtgtaacgcctccgcttggtgggcatgtaacgctcgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatc 23350415  T
Q  996 ggaatgagagtgatcctgaggtcgtacaggta 1027  Q
    |||||||||| |||| ||||| ||||||||||    
T  23350414 ggaatgagagagatcttgaggccgtacaggta 23350383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 901 - 1029
Target Start/End: Complemental strand, 44471555 - 44471423
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||| ||||||||||||| ||| |||||||||||||    
T  44471555 tgtaacacctctgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctagcatgcttctaggaaaaactgaatcacatcg 44471456  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||||| |||| ||||| ||||||||||||    
T  44471455 gaatgagagagatcttgaggccgtacaggtatg 44471423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 901 - 1016
Target Start/End: Complemental strand, 15306326 - 15306208
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcg-ggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||| |||| ||| ||||||     
T  15306326 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcgaggagtggtctggctcctggca-gcttctaggcaaaacagaaccacatca 15306228  T
Q  997 gaatgagagtgatcctgagg 1016  Q
    ||||||||| ||||||||||    
T  15306227 gaatgagagggatcctgagg 15306208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 44471099 - 44470991
Alignment:
Q  901 tgtaacgcctccgcttggtggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcgg 997  Q
    |||||||||||||||||||    |||||||||||||||| |||| |||||| |||| || ||||||| ||||||||||||||||| ||||||||||||||    
T  44471099 tgtaacgcctccgcttggt----tgtaacgcccgaggctaatgagggcggggagtggtccggctcctagcatgcttctaggcaaaactgaatcacatcgg 44471004  T
Q  998 aatgagagtgatc 1010  Q
    |||||||| ||||    
T  44471003 aatgagagagatc 44470991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 971 - 1029
Target Start/End: Complemental strand, 33987227 - 33987169
Alignment:
Q  971 gcttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||    
T  33987227 gcttctaggcaaactgaatcacatcggaatgagagggatcatgagatcgtgcaggtatg 33987169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 900 - 1012
Target Start/End: Original strand, 49998545 - 49998661
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatc 995  Q
    ||||||||||||| |||||||| ||||||| || | |||||||||| |||||| |||| ||  |||| |||||||||||||| |||| || |||||||||    
T  49998545 gtgtaacgcctccccttggtgggcatgtaaagctcaaggctgatgagggcggggagtggtccagctcttggcatgcttctagacaaaactaaatcacatc 49998644  T
Q  996 ggaatgagagtgatcct 1012  Q
    |||||||||| ||||||    
T  49998645 ggaatgagagggatcct 49998661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 13015476 - 13015535
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    ||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  13015476 ctcctcctcgaagtctcatgttcgattctctcaggtgtcaatttaggtgggttaatttag 13015535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 971 - 1014
Target Start/End: Original strand, 17028858 - 17028901
Alignment:
Q  971 gcttctaggcaaactgaatcacatcggaatgagagtgatcctga 1014  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  17028858 gcttctaggcaaactgaatcacatcggaatgagagggatcctga 17028901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 39509119 - 39509178
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    ||||||||||||||  || ||||||||||| |||||| ||||||||||||||||||||||    
T  39509119 ctcctcctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaatttag 39509178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 923 - 1016
Target Start/End: Complemental strand, 14572357 - 14572261
Alignment:
Q  923 atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaac-tgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||| |||||||||| |||||| |||| || ||||| |||||||| |||||  |||  ||||||||||||||||||||| ||||||||||    
T  14572357 atgtaacgcccaaggctgatgagggcggggagtggtccggctcttggcatgcatctagaaaaatatgaatcacatcggaatgagagggatcctgagg 14572261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 7949481 - 7949415
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || |||||||||||||  ||||||||||||||||| |||||||| ||||||    
T  7949481 ctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttc 7949415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 30938246 - 30938180
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || ||||||||||| ||| || |||||||||||||||| ||||| ||||||    
T  30938246 ctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 972 - 1038
Target Start/End: Complemental strand, 9424013 - 9423946
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||| | ||| |||||||| ||||||||||| |||||||||||||| || |||| ||||||||||    
T  9424013 cttctagacgaaccgaatcacaccggaatgagagggatcctgaggtcgtgcatgtatgggactgcatg 9423946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 9936988 - 9936929
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    ||||||||||| ||| || ||||||||||| ||  ||||||||| |||||||||||||||    
T  9936988 ctcctcctcgaagtttcaggttcgattctcaccgttgtcaatttgggtgggttaatttag 9936929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 1004
Target Start/End: Complemental strand, 27578683 - 27578577
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggag-tgtctggctcctggcatgcttctaggc-aaactgaatcacatcg 996  Q
    |||||| |||||||||||||| |||||||| | |||||||||||| ||| |||||  ||| ||||||||||| |||||||||| |||| |||||| |||     
T  27578683 tgtaacacctccgcttggtgggcatgtaacactcgaggctgatgagggcggggagcggtccggctcctggca-gcttctaggcaaaaccgaatcatatca 27578585  T
Q  997 gaatgaga 1004  Q
    ||||||||    
T  27578584 gaatgaga 27578577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 47386799 - 47386752
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  47386799 gttcaattctctctagtgtcaatttaggtgggctaatttagcttcttc 47386752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 49262692 - 49262645
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||    
T  49262692 gttcgattctccccagtgccaatttaggtgggctaatttagtttcttc 49262645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 620
Target Start/End: Original strand, 4185143 - 4185201
Alignment:
Q  562 tcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    |||||||||||||  || | ||||||||| | |||||||||||||||||| ||||||||    
T  4185143 tcctcctcgaggtctcaagatcgattctccctagtgtcaatttaggtgggctaatttag 4185201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 8030231 - 8030165
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || ||||||||| ||| ||||||||||| |||||| |||||||| ||||||    
T  8030231 ctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 8030165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 26356882 - 26356932
Alignment:
Q  577 catgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||||| |||||| ||||||||||||| || ||||| ||||||    
T  26356882 catgttcgattctccccagtgccaatttaggtgggctagtttagcttcttc 26356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 626
Target Start/End: Original strand, 37443751 - 37443813
Alignment:
Q  564 ctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||| ||||||||||| ||||  ||| ||||||| ||||| |||||||| |||||    
T  37443751 ctcctcgaggtttcatgttcgattatctctggtgccaatttatgtgggctaatttagtttctt 37443813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 51954163 - 51954229
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || ||| |||| ||||| |||||||||| |||||| |||||||| ||||||    
T  51954163 ctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttcttc 51954229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 562 - 627
Target Start/End: Original strand, 4688613 - 4688678
Alignment:
Q  562 tcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||| |||||| || | | |||| || |||||| |||||||||||||||||||||| ||||||    
T  4688613 tcctccttgaggtttcaggattgattatccccagtgccaatttaggtgggttaatttagtttcttc 4688678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 972 - 1029
Target Start/End: Original strand, 14351780 - 14351837
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||| ||||| |||||||| | ||||||||| |||||||||||||| || |||||    
T  14351780 cttctagacaaaccgaatcacaccagaatgagagggatcctgaggtcgtgcatgtatg 14351837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 773 - 854
Target Start/End: Original strand, 37781937 - 37782017
Alignment:
Q  773 agtgatacaaagaggttacaataaattagattgaagatctctcaaagaacaatccttaatttttatcaatttttcatgtcac 854  Q
    ||||||||||||||||||||| ||||||| || || | ||| ||||||||||  |||||||| || | |||||||| |||||    
T  37781937 agtgatacaaagaggttacaagaaattagctt-aaaaactcacaaagaacaaatcttaatttctacccatttttcaagtcac 37782017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-39; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 11517624 - 11517482
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||    
T  11517624 tgtaacgcctccgcttggtgggcatgtaacgcccgaggttgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatcg 11517525  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||    
T  11517524 gaatgagagggatcctgaggccgtacaggtatgggactgcatg 11517482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 901 - 1029
Target Start/End: Original strand, 9124869 - 9125001
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||    
T  9124869 tgtaacgccttcgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatcg 9124968  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||||| |||| ||||| ||| ||||||||    
T  9124969 gaatgagagagatcttgaggccgtgcaggtatg 9125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 899 - 1038
Target Start/End: Complemental strand, 13125374 - 13125230
Alignment:
Q  899 tgtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggc-aaactgaatcacat 994  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| ||    
T  13125374 tgtgtaacgcctccgcttggtgggcatgtaacgcccgaggcggatgagggcggggagtggtctggctcctggcatgcttctaggcaaaactgaatcatat 13125275  T
Q  995 cggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||||| |||| ||||| | | ||||||| ||||||||||    
T  13125274 cggaatgagagggatcttgaggccctgcaggtatgggactgcatg 13125230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 42515002 - 42515144
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcgg-gagtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcg 996  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||||||| | |||||||||||    
T  42515002 tgtaacgtctccgcttggtgggcatgtaacgcccgaggctgatgagggtggagagtggtccggctcctggcatgcttctaggcaaaattgaatcacatcg 42515101  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||| |||||||||| ||| |||||||| |||||||||    
T  42515102 gaatgagagggatcctgaggccgtgcaggtatgagactgcatg 42515144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 900 - 1031
Target Start/End: Original strand, 18833195 - 18833330
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatc 995  Q
    |||||||||| ||||||||||| |||||||||| |  ||||||||| |||||| |||| || || |||||||||||||||||||||| ||||||||||||    
T  18833195 gtgtaacgcccccgcttggtgggcatgtaacgctcagggctgatgagggcggggagtggtccggttcctggcatgcttctaggcaaaactgaatcacatc 18833294  T
Q  996 ggaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    |||||||||| | |||||||| ||||||||||||||    
T  18833295 ggaatgagagggttcctgaggccgtacaggtatgga 18833330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 920 - 1038
Target Start/End: Complemental strand, 13124917 - 13124795
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggc-aaactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| |||||    
T  13124917 ggcatgtaacgcccgaggctgatgagggcggggagtggtctggctcctggcatgcttctaggcaaaactgaatcatattggaatgagagggatcttgagg 13124818  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
     ||| ||||||| ||||||||||    
T  13124817 ccgtgcaggtatgggactgcatg 13124795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 924 - 1038
Target Start/End: Complemental strand, 2941969 - 2941851
Alignment:
Q  924 tgtaacgcccgaggctgatgaaggcg-ggagtgtct-ggctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgaggtcgt 1020  Q
    |||||||||| |||||||||| |||| |||||| |  |||||| | |||||||||||||||| |||||||||||| ||||||||| |||||||||| |||    
T  2941969 tgtaacgcccaaggctgatgagggcgaggagtggcccggctcccgccatgcttctaggcaaaactgaatcacatcagaatgagagggatcctgaggccgt 2941870  T
Q  1021 acaggtat-ggactgcatg 1038  Q
    |||||||| ||||||||||    
T  2941869 acaggtatgggactgcatg 2941851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 42712007 - 42712066
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    ||||||||| ||||  |||||||||||||| | |||||||||||||||||| ||||||||    
T  42712007 ctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaatttag 42712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 45229033 - 45228986
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  45229033 gttcgattctctccagtgtcaatttaagtgggctaatttagcttcttc 45228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 7309405 - 7309470
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  7309405 ctcctcctcgaggtctcaagttcgattctctcc-gtgtcaatttaagtgggctaatttagcttcttc 7309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 21558177 - 21558243
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || |||||||||||||  ||| |||||||||||||||||||||| ||||||    
T  21558177 ctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttc 21558243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 37473663 - 37473729
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||| |||||  || ||||||||||| | | ||||||||||||||||||||||||| ||||||    
T  37473663 ctcctccttgaggtctcaggttcgattctccctaatgtcaatttaggtgggttaatttagcttcttc 37473729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 5934170 - 5934235
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||| |||||| |||||||||||| |||  ||||||||||||||||  |||||||| |||||    
T  5934170 ctcctccttgaggtttcatgttcgattccctctggtgtcaatttaggtggactaatttagtttctt 5934235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 982 - 1030
Target Start/End: Original strand, 679812 - 679860
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    |||||||||||||| ||||||||| ||||||||||||||  ||||||||    
T  679812 aactgaatcacatcagaatgagagggatcctgaggtcgtgtaggtatgg 679860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 626
Target Start/End: Original strand, 3174982 - 3175041
Alignment:
Q  567 ctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||  || ||||||||||||||| | ||||||||| ||||||||||||| |||||    
T  3174982 ctcgaggtctcaggttcgattctctccaatatcaatttagttgggttaatttagcttctt 3175041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 2446357 - 2446423
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||| |  || |||||||||||||| ||| | ||||||||||| |||||||| ||||||    
T  2446357 ctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttcttc 2446423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 17041039 - 17040973
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || ||||||||||||| |||| |||||| ||||||| ||||||| ||||||    
T  17041039 ctcctcctcaaggtctcaggttcgattctctcaagtgccaatttgggtgggtcaatttagcttcttc 17040973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 22035447 - 22035513
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||||   || |||||||||||||| ||||||||||| ||||  |||||||| ||||||    
T  22035447 ctcctcctcgaggacccaggttcgattctctcctgtgtcaatttaagtggactaatttagcttcttc 22035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Original strand, 41975955 - 41976001
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||| |||||||||||| ||||| |||||||| |||||    
T  41975955 gttcgattctctctagtgtcaatttaagtgggctaatttagcttctt 41976001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 972 - 1029
Target Start/End: Complemental strand, 6747759 - 6747702
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||| ||| ||||||||||| |||||||||| |||||||||| |||  |||||||    
T  6747759 cttctagacaagctgaatcacattggaatgagagggatcctgaggccgtgtaggtatg 6747702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 901 - 1029
Target Start/End: Complemental strand, 34309175 - 34309043
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcg-ggagtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||| |||||||||||||    
T  34309175 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcgaggagtggtccggctcctggcatgcttctaggcaaaactgaatcacatcg 34309076  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||||| |||||||||| |||||| |||||    
T  34309075 gaatgagagggatcctgaggccgtacaagtatg 34309043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 901 - 1029
Target Start/End: Complemental strand, 34308715 - 34308583
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||||| |||| || |||||||||| |||||||||||||| |||||||||||||    
T  34308715 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgataagggcggggagtggtccggctcctggcgtgcttctaggcaaaactgaatcacatcg 34308616  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    |||||| || |||||||||| |||||| |||||    
T  34308615 gaatgaaagggatcctgaggccgtacaagtatg 34308583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 901 - 1030
Target Start/End: Original strand, 25144682 - 25144815
Alignment:
Q  901 tgtaacgcctccgcttggt-ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||| || ||||||||| |||||||||||  |||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||     
T  25144682 tgtaacacccccgcttggtaggcatgtaacgttcgaggctgatgagggcggggagtggtctggctcctggcatgcttctaggcaaaactgaatcacatca 25144781  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||||| ||||  |||||||| |||||||||    
T  25144782 gaatgagagagatctcgaggtcgtgcaggtatgg 25144815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 896 - 1038
Target Start/End: Original strand, 12100597 - 12100743
Alignment:
Q  896 ttttgtgtaacgcctccgcttggtg-gcatgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctagg-caaactgaatca 991  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||| ||| | |||||||||||||||||||  |||||||||||    
T  12100597 ttttctgtaacgcctccgctcggtgtgcatgtaacacccgaggctgatgagggcggggagtggtccgactcctggcatgcttctaggaaaaactgaatca 12100696  T
Q  992 catcggaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||| |||||||  |||||||||| |||||||||||| |||||||||    
T  12100697 catcgaaatgaga-agatcctgaggccgtacaggtatgagactgcatg 12100743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 901 - 1012
Target Start/End: Original strand, 25147446 - 25147561
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||| | |||||||||||| |||||| |||| || ||||| ||||||||||||||||||| || ||||||||||    
T  25147446 tgtaacgcctccgcttggtgggcatgtaacactcgaggctgatgagggcggggagtggtccggctcttggcatgcttctaggcaaaactaaatcacatcg 25147545  T
Q  997 gaatgagagtgatcct 1012  Q
    ||||||||| ||||||    
T  25147546 gaatgagagagatcct 25147561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 920 - 1030
Target Start/End: Original strand, 25147897 - 25148010
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggc-aaactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||||||| ||||  |||||| |||||| |||| | ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||| ||||    
T  25147897 ggcatgtaacgctcgagtatgatgagggcggggagtggtttggctcctggcatgcttctaggcaaaactgaatcacataagaatgagagggatcccgagg 25147996  T
Q  1017 tcgtacaggtatgg 1030  Q
    ||||  ||||||||    
T  25147997 tcgtgtaggtatgg 25148010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 901 - 1029
Target Start/End: Complemental strand, 21316345 - 21316213
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctagg-caaactgaatcacatcg 996  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| |||| |||||| || ||||||  ||| ||||||||||||    
T  21316345 tgtaacacctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggcttctggcaagcatctaggaaaaattgaatcacatcg 21316246  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
      ||||||| |||||| ||| ||| ||||||||    
T  21316245 cgatgagagggatcctaaggccgtgcaggtatg 21316213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 901 - 944
Target Start/End: Complemental strand, 31283432 - 31283388
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatga 944  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  31283432 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatga 31283388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 968411 - 968476
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||  || ||||||||||||||  || ||||||||||||| |||||||| |||||    
T  968411 ctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 562 - 627
Target Start/End: Original strand, 7347887 - 7347952
Alignment:
Q  562 tcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||| |||||| || |||| ||||||||  ||||||||||||||||| |||||||| ||||||    
T  7347887 tcctccttgaggtttcaggttcaattctctcttgtgtcaatttaggtgggctaatttagcttcttc 7347952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 901 - 1014
Target Start/End: Original strand, 9250913 - 9251029
Alignment:
Q  901 tgtaacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcg-ggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatcg 996  Q
    |||||| ||||||||||||||  ||||||||  ||||||||||||||||| ||||| ||||| ||||| |||  ||| ||||| |||| ||||||||||     
T  9250913 tgtaacacctccgcttggtggatatgtaacgttcgaggctgatgaaggcgaggagtggtctgcctcctagca-acttttaggcaaaaccgaatcacatca 9251011  T
Q  997 gaatgagagtgatcctga 1014  Q
    ||||||||| ||||||||    
T  9251012 gaatgagagggatcctga 9251029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 28560671 - 28560720
Alignment:
Q  577 catgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||||||| ||||  ||||||||||||||||||||| |||||    
T  28560671 catgttcgattctctctagtgctaatttaggtgggttaatttagtttctt 28560720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 31408149 - 31408084
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||| ||||| || ||||||||||||| | |||||||||| | |||||||||||| |||||    
T  31408149 ctcctcctcaaggtttcaggttcgattctctctaatgtcaatttaagggggttaatttagcttctt 31408084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 992 - 1038
Target Start/End: Original strand, 17103086 - 17103133
Alignment:
Q  992 catcggaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    |||||||||||||| |||||||||| |||||||||||| |||||||||    
T  17103086 catcggaatgagagagatcctgaggccgtacaggtatgagactgcatg 17103133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 6536569 - 6536635
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || |||| ||||||||  ||| |||||||||||||||||||||| ||||||    
T  6536569 ctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 581 - 627
Target Start/End: Original strand, 8485068 - 8485114
Alignment:
Q  581 ttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||| ||| ||||||||||||| |||||||| ||||||    
T  8485068 ttcgattctctccggtgccaatttaggtgggctaatttagcttcttc 8485114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Complemental strand, 11492081 - 11492035
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||| |||||||||||| |||||| |||||||| |||||    
T  11492081 gttcgattctcttcagtgtcaatttgggtgggctaatttagcttctt 11492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 11819825 - 11819891
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || ||||||||| ||| ||||||||||| |||||| |||||||| ||||||    
T  11819825 ctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttcttc 11819891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 11942502 - 11942560
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    ||||| ||||||||| ||| |||||||||  ||||||||||||| | ||||||||||||    
T  11942502 ctccttctcgaggtttcatattcgattcttaccagtgtcaatttggatgggttaattta 11942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 619
Target Start/End: Complemental strand, 15948076 - 15948018
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    ||||||||||| || | | ||||||||||||||||||||| |||| ||||| |||||||    
T  15948076 ctcctcctcgatgtcataggttcgattctctccagtgtcattttaagtgggctaattta 15948018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 18546389 - 18546323
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || ||||||||||| || | ||||||||||||| | |||||||| ||||||    
T  18546389 ctcctcctcgaggtctcaggttcgattctcaccggcgtcaatttaggtgagataatttagcttcttc 18546323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 900 - 983
Target Start/End: Original strand, 22705089 - 22705174
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctaggcaaa 983  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||| | | |||||| ||| ||||||||||| ||||| |||||||    
T  22705089 gtgtaacgcctccgctcggtgggcatgtaacgctcgaggctgatgaggacggggagtggtcaggctcctggca-gcttcaaggcaaa 22705174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 982 - 1016
Target Start/End: Complemental strand, 22840680 - 22840646
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||||||||||||||||||| ||||||||||    
T  22840680 aactgaatcacatcggaatgagagagatcctgagg 22840646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 983 - 1029
Target Start/End: Original strand, 28453334 - 28453380
Alignment:
Q  983 actgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  28453334 actgaatcacaccggaatgagagggatcccgaggtcgtgcaggtatg 28453380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 3129873 - 3129832
Alignment:
Q  579 tgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  3129873 tgttcgattctctctagtgtcaatttaagtgggctaatttag 3129832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 30966144 - 30966286
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||||||||||||||||||||| ||||||| |||||    
T  30966144 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggtggggagtggtccggctcctggcatgcttctaggcaaaactgaatcgcatcg 30966243  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||    
T  30966244 gaatgagagggatcctgaggccgtacaggtatgggactgcatg 30966286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 30966600 - 30966742
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||| |||||    
T  30966600 tgtaacacctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcgcatcg 30966699  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||    
T  30966700 gaatgagagggatcctgaggccgtacatgtatgggactgcatg 30966742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 29259856 - 29259714
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaa-actgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| || ||||||||||||||||||||| || ||||||||||||||    
T  29259856 tgtaacgcctccgcttggtgggcatgtaacgctcgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggtaagactgaatcacatcg 29259757  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||  |||||| |||| ||||||||||    
T  29259756 gaatgagagggatcctgagaccgtacaagtatgggactgcatg 29259714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 24818236 - 24818378
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||||||||||||||||| ||| |||||||||||||    
T  24818236 tgtaacgcctgcgcttggtgggcatgtaacgcccgaggctgatgagggtggggagtggtccggctcctggcatgcttctaggtaaaactgaatcacatcg 24818335  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| ||| || |||| ||||||||||    
T  24818336 gaatgagagggatcctgaggccgtgcatgtatgggactgcatg 24818378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 901 - 1030
Target Start/End: Complemental strand, 5400053 - 5399920
Alignment:
Q  901 tgtaacgcctccgcttggtg-gcatgtaacgcccgaggctgatgaaggc-gggagtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcg 996  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||| | |||||||||||    
T  5400053 tgtaacgcctccgcttggtgagcatgtaatgcctgaggctgatgagggcagggagtggtccggctcctggcatgcttctaggcaaaattgaatcacatcg 5399954  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||||| |||| ||||||||| || ||||||    
T  5399953 gaatgagagggatcttgaggtcgtgcaagtatgg 5399920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 922 - 1029
Target Start/End: Original strand, 82952 - 83059
Alignment:
Q  922 catgtaacgcccgaggctgatgaaggcgg-gagtg-tctggctcctggcatgcttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcg 1019  Q
    |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||||| | |    
T  82952 catgtaacgcccgaagctgacgagggcggagagtggtctggctcctggca-gcttctaggcaa-ctgaatcacgtcgaaatgagagggatcctgagattg 83049  T
Q  1020 tacaggtatg 1029  Q
    | ||||||||    
T  83050 tgcaggtatg 83059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 42222949 - 42222996
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||    
T  42222949 gttcgattctcttcggtgtcaatttgggtgggttaatttagattcttc 42222996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 981 - 1038
Target Start/End: Original strand, 1953149 - 1953207
Alignment:
Q  981 aaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    |||| |||||||||||||||||||| |||||||| ||||| |||||||| |||||||||    
T  1953149 aaaccgaatcacatcggaatgagagggatcctgaagtcgtgcaggtatgagactgcatg 1953207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 982 - 1038
Target Start/End: Complemental strand, 25338148 - 25338091
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    |||||||||||| ||||||||||| | |||||||||||| ||||||| ||||||||||    
T  25338148 aactgaatcacaccggaatgagagggttcctgaggtcgtgcaggtatgggactgcatg 25338091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 626
Target Start/End: Complemental strand, 41504943 - 41504898
Alignment:
Q  581 ttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  41504943 ttcgattctctccggtgtcaatttaagtgggttaatttagcttctt 41504898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 982 - 1017
Target Start/End: Original strand, 1912520 - 1912555
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggt 1017  Q
    |||||||||||||||||||||||| |||||||||||    
T  1912520 aactgaatcacatcggaatgagagggatcctgaggt 1912555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 972 - 1030
Target Start/End: Original strand, 33174943 - 33175001
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||| ||| | |||||||||||||||||||| |||||||||| |||  ||||||||    
T  33174943 cttctagacaagccgaatcacatcggaatgagagggatcctgaggccgtgtaggtatgg 33175001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 33582022 - 33582088
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||| |||||  || ||||||||||||| | |||||||||||||||  |||||||| ||||||    
T  33582022 ctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttcttc 33582088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 27244357 - 27244422
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||||||  | |||||||||||| |||||| |||||| ||| | |||||||| |||||    
T  27244357 ctcctcctcgaggtttaaggttcgattctcttcagtgttaatttaagtgagctaatttagcttctt 27244422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 580 - 625
Target Start/End: Original strand, 37971963 - 37972008
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattct 625  Q
    |||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  37971963 gttcgattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 901 - 1031
Target Start/End: Original strand, 105630 - 105764
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||| |||||| |||| ||||| |||||||||||||||||||||| || ||||||||||    
T  105630 tgtaacgcctccgcttggtgggcatgtaacacccaaggctgatgagggcggggagtggtctggttcctggcatgcttctaggcaaaactaaatcacatcg 105729  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    ||||||||| |||||||||| ||||||||||||||    
T  105730 gaatgagagggatcctgaggccgtacaggtatgga 105764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 900 - 1030
Target Start/End: Complemental strand, 142511 - 142377
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatc 995  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||| || ||||||||||||||||||||| ||| ||||||||||||    
T  142511 gtgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgaggacggggagtggtccggctcctggcatgcttctaggaaaaactgaatcacatc 142412  T
Q  996 ggaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    |||||||||| |||||||||| ||| |||||||||    
T  142411 ggaatgagagggatcctgaggccgtgcaggtatgg 142377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 898 - 1020
Target Start/End: Complemental strand, 32388970 - 32388844
Alignment:
Q  898 ttgtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaact-gaatcaca 993  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| | ||||||||    
T  32388970 ttgtgtaacgcctccgcttagtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaattgaatcaca 32388871  T
Q  994 tcggaatgagagtgatcctgaggtcgt 1020  Q
    |||||||||||| ||||||||||||||    
T  32388870 tcggaatgagagggatcctgaggtcgt 32388844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 31284512 - 31284370
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| |||||| |||| || | ||||||||||||||||||||||| |||||||||||||    
T  31284512 tgtaacgcctccgcttagtgggcatgtatcgcccgaggctgatgagggcggggagtggtccgactcctggcatgcttctaggcaaaactgaatcacatcg 31284413  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||| ||||||||| ||||||| ||||||||||    
T  31284412 gaatgagagggatcttgaggtcgtgcaggtatgggactgcatg 31284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 904 - 1038
Target Start/End: Original strand, 41472214 - 41472353
Alignment:
Q  904 aacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcgg-gagtg-tctggctcctggcatgcttctaggcaa-actgaatcacatcggaa 999  Q
    |||||||| | ||||||| |||||||||||| ||||||| || || || ||||| || |||||||||||||| ||||||||| |||||||||||||||||    
T  41472214 aacgcctctgattggtgggcatgtaacgcccaaggctgaagagggtggtgagtggtccggctcctggcatgcatctaggcaagactgaatcacatcggaa 41472313  T
Q  1000 tgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  41472314 tgagagggatcctgaggtcgtacaggtatgagactgcatg 41472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 12820554 - 12820696
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||  ||||||||||| |||||||||| |||||||||||| |||||| |||| || ||||||| ||||||||||||||||| |||||||||||||    
T  12820554 tgtaacgctcccgcttggtgggcatgtaacgctcgaggctgatgagggcggggagtggtccggctccttgcatgcttctaggcaaaactgaatcacatcg 12820653  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| ||| || ||| ||||||||||| ||||||||||    
T  12820654 gaatgagagggattctaaggccgtacaggtatgggactgcatg 12820696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 901 - 1029
Target Start/End: Original strand, 41473907 - 41474039
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaa-actgaatcacatcg 996  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| |||| || ||||||| |||||||||| ||||| ||||||||||||||    
T  41473907 tgtaacgcctccgcttgatgggcatgtaacgcctgaggctgatgagggcggggagtggtccggctcctagcatgcttctcggcaagactgaatcacatcg 41474006  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
     |||||||| |||| ||||||||| ||||||||    
T  41474007 aaatgagagggatcttgaggtcgttcaggtatg 41474039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 926 - 1030
Target Start/End: Original strand, 8067216 - 8067323
Alignment:
Q  926 taacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcggaatgagagtgatcctgaggtcgtac 1022  Q
    ||||||||||||||||||| |||||| |||| || ||||||||||||||||||| ||||| | |||||||||||||||||||| || ||||||| ||| |    
T  8067216 taacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaagcaaaattgaatcacatcggaatgagagggaccctgaggccgtgc 8067315  T
Q  1023 aggtatgg 1030  Q
    ||||||||    
T  8067316 aggtatgg 8067323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 25248021 - 25248163
Alignment:
Q  901 tgtaacgcctccgcttggtggcat-gtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||| |||  | ||||||||||||||| |||| || ||| |||| || |||||||||||||||| |||||||| |||||||||||||    
T  25248021 tgtaacgcctccgcttgatgggttagtaacgcccgaggctaatgagggtggggagtggtcaggctcctggcatgcttataggcaaaactgaatcacatcg 25248120  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| ||| || ||| ||| ||||||| ||||||||||    
T  25248121 gaatgagagggattctaaggccgtgcaggtatgggactgcatg 25248163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 561 - 611
Target Start/End: Original strand, 36720430 - 36720480
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtggg 611  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  36720430 ctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtggg 36720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 44743882 - 44743816
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  44743882 ctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttc 44743816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 924 - 1016
Target Start/End: Complemental strand, 27187542 - 27187447
Alignment:
Q  924 tgtaacgcccgaggctgatgaaggcgg-gagt-gtctggctcctggcatgcttctagg-caaactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||||||||||||| |||||  ||| ||| ||||||| ||| |||||||||  ||| |||||||||| |||||||||| ||||||||||    
T  27187542 tgtaacgcccgaggctgatgagggcggcaagtggtccggctcctagcaagcttctaggaaaaattgaatcacattggaatgagagggatcctgagg 27187447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 7477102 - 7477243
Alignment:
Q  901 tgtaacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||| ||||||||||  |||||| || |||||||||||| | |||| |||| || | ||||||||| | ||||||||||| |  ||||||||||    
T  7477102 tgtaacgccttcgcttggtgggtatgtaatgctcgaggctgatgaggacggggagtggtccgactcctggca-gtttctaggcaaaacataatcacatcg 7477200  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||| |||||| | ||||| |||||||| |||||||||    
T  7477201 gaatgagagggatcctaaagtcgtgcaggtatgagactgcatg 7477243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 7493792 - 7493933
Alignment:
Q  901 tgtaacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||| ||||||||||  |||||| || |||||||||||| | |||| |||| || |||| |||||  ||||||||||||| |  ||||||||||    
T  7493792 tgtaacgccttcgcttggtgggtatgtaatgctcgaggctgatgaggacggggagtggtccggcttctggcg-gcttctaggcaaaacataatcacatcg 7493890  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||| |||||| | ||||| |||||||| |||||||||    
T  7493891 gaatgagagagatcctaaagtcgtgcaggtatgagactgcatg 7493933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 8075154 - 8075088
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||| || ||||||||| ||| ||||||||||| |||||| |||||||| ||||||    
T  8075154 ctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 8075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 25035754 - 25035812
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    |||||||||||| || || ||||||||||| || |||||||||| ||||||||||||||    
T  25035754 ctcctcctcgagatttcaggttcgattctcaccggtgtcaatttgggtgggttaattta 25035812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 47454644 - 47454578
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || ||||||||||| ||| || |||||||||||||||| ||||| ||||||    
T  47454644 ctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 47454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 52770010 - 52769944
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||| |||||  || ||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  52770010 ctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttc 52769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 33861761 - 33861702
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    ||||||||||||||   ||||||||||||| ||| | |||||||||||||| ||||||||    
T  33861761 ctcctcctcgaggtctaatgttcgattctccccaatatcaatttaggtgggctaatttag 33861702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 565 - 627
Target Start/End: Original strand, 2667915 - 2667977
Alignment:
Q  565 tcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||  || |||||||| |||| |||||||||||||||||| || ||||| ||||||    
T  2667915 tcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagcttcttc 2667977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 611
Target Start/End: Original strand, 14186696 - 14186746
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtggg 611  Q
    ||||||||| ||||  || |||||||||||||| |||||||||||||||||    
T  14186696 ctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtggg 14186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 982 - 1016
Target Start/End: Original strand, 30529682 - 30529716
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||||||||||||||||||| ||||||||||    
T  30529682 aactgaatcacatcggaatgagagggatcctgagg 30529716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 671 - 732
Target Start/End: Complemental strand, 41163384 - 41163322
Alignment:
Q  671 cacaagcataatcaaagaacatggataagagagtag-agaaacaacacaccaatgtttgttta 732  Q
    ||||||||||||||||||  |  ||||||||||||| |||| |||||||||||| ||||||||    
T  41163384 cacaagcataatcaaagattagagataagagagtagaagaatcaacacaccaatatttgttta 41163322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 51903905 - 51903839
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||| |||  || |||||||||||||| ||||||||||  ||||| |||||||| ||||||    
T  51903905 ctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttcttc 51903839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 982 - 1038
Target Start/End: Original strand, 28561741 - 28561798
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    |||||||||||| ||||||||||| | |||||||| ||| ||||||| ||||||||||    
T  28561741 aactgaatcacaccggaatgagagggttcctgaggccgtgcaggtatgggactgcatg 28561798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 982 - 1038
Target Start/End: Original strand, 39653159 - 39653216
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    |||||||||||| ||||||||||| | |||||||| ||| ||||||| ||||||||||    
T  39653159 aactgaatcacaccggaatgagagggttcctgaggccgtgcaggtatgggactgcatg 39653216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 162914 - 162772
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||| || ||| |||| ||||||||||| |||||||||||||||| |||||| ||||||    
T  162914 tgtaacgcctcctcttggtggacatgtaatgcccgaggctgatgagggtggggagtggtctggctcctgacatgcttctaggcaaaactgaattacatcg 162815  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||| |||||||||| |||||||||||| |||||||||    
T  162814 gaatgagagggatcctgaggccgtacaggtatgtgactgcatg 162772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 13492699 - 13492841
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatcg 996  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  13492699 tgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggcatgcttctaggcaaaactgaatcatatcg 13492798  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||||  ||||||||||  || |||||||| |||||||||    
T  13492799 gaatgagaaggatcctgaggctgtgcaggtatgagactgcatg 13492841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 901 - 1016
Target Start/End: Original strand, 16519879 - 16519997
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatcg 996  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||| ||| ||||||||||| |||||||||| |||| |||||||||||    
T  16519879 tgtaacgcctccacttggtgggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcctggca-gcttctaggcaaaacagaatcacatcg 16519977  T
Q  997 gaatgagagtgatcctgagg 1016  Q
    ||||||||| ||||||||||    
T  16519978 gaatgagagggatcctgagg 16519997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 920 - 1038
Target Start/End: Complemental strand, 17731329 - 17731207
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||||| ||||||||||| |||||| |||| || ||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  17731329 ggcatgtaacgcctgaggctgatgagggcggggagtggtccggctcctagcatgcttctaggcaaaattgaatcacatcggaatgagagggatcctgagg 17731230  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
     ||| ||||||| ||||||||||    
T  17731229 ccgttcaggtatgggactgcatg 17731207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 900 - 1016
Target Start/End: Original strand, 9351972 - 9352091
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctaggc-aaactgaatcacatc 995  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||| ||| ||||||||||| |||||||||| ||||  |||||||||    
T  9351972 gtgtaacgcctccgcttggtgggcatgtaacacccgaggctgatgagggcggggagtggtccggctcctggca-gcttctaggcaaaacataatcacatc 9352070  T
Q  996 ggaatgagagtgatcctgagg 1016  Q
    | |||||||| ||||||||||    
T  9352071 gaaatgagagggatcctgagg 9352091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 920 - 1038
Target Start/End: Original strand, 7912240 - 7912362
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||||||||||| || ||||| |||||| |||| || ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||  ||||    
T  7912240 ggcatgtaacgcccgacgcagatgagggcggggagtggtccggctcctggcatgcttctaggaaaaactgaatcacatcggaatgagagggatctcgagg 7912339  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
     ||| ||||||| ||||||||||    
T  7912340 ccgtgcaggtatgggactgcatg 7912362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 924 - 1038
Target Start/End: Original strand, 13490055 - 13490173
Alignment:
Q  924 tgtaacgcccgaggctgatgaaggc-gggagt-gtctggctcctggcatgcttctagg-caaactgaatcacatcggaatgagagtgatcctgaggtcgt 1020  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||  ||||| |||||||||| |||||||| |||| |||||  ||    
T  13490055 tgtaacgcccgaggctgatgaaggcggggagtggtccggctcctgacatgcttctaggaaaaacttaatcacatcgaaatgagagagatcatgaggctgt 13490154  T
Q  1021 acaggtat-ggactgcatg 1038  Q
     ||||||| ||||||||||    
T  13490155 gcaggtataggactgcatg 13490173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 901 - 1012
Target Start/End: Complemental strand, 13191749 - 13191634
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcgg-gagt-gtctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||| |||| ||| ||||| ||| ||||||| ||| ||| || ||||||||||    
T  13191749 tgtaatgcctccgcttggtgggcatgtaacgcctgaggctgatgagggcggcgagtagtccggctcttggtatgcttcgaggaaaaactaaatcacatcg 13191650  T
Q  997 gaatgagagtgatcct 1012  Q
    ||||||||| ||||||    
T  13191649 gaatgagagggatcct 13191634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 924 - 1038
Target Start/End: Original strand, 7911812 - 7911930
Alignment:
Q  924 tgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcggaatgagagtgatcctgaggtcgt 1020  Q
    |||||| ||||||||||||||  ||||| |||| || | ||||||||||| ||||||| ||| |||||||||||||||||||||| ||||  |||| |||    
T  7911812 tgtaacacccgaggctgatgagagcggggagtggtccgactcctggcatgtttctaggaaaaactgaatcacatcggaatgagagggatctcgaggccgt 7911911  T
Q  1021 acaggtat-ggactgcatg 1038  Q
     ||||||| ||||||||||    
T  7911912 gcaggtataggactgcatg 7911930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 981 - 1030
Target Start/End: Complemental strand, 9440580 - 9440531
Alignment:
Q  981 aaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  9440580 aaactgaatcacatcggaatgagagggatcctgaagtcgtgcaggtatgg 9440531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 626
Target Start/End: Complemental strand, 12234528 - 12234469
Alignment:
Q  567 ctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||  || ||||||||||||||||||||||||||| |||| |||||||| |||||    
T  12234528 ctcgaggtctcaggttcgattctctccagtgtcaatttagatgggataatttagcttctt 12234469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 580 - 626
Target Start/End: Original strand, 3715520 - 3715566
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||||||||||||||||||||||| | |||||| |||||    
T  3715520 gttcgattctctccagtgtcaatttaggtgggctgatttagcttctt 3715566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 986 - 1031
Target Start/End: Complemental strand, 9440456 - 9440411
Alignment:
Q  986 gaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||    
T  9440456 gaatcacatcggaatgagagggatcctgaagtcgtgcaggtatgga 9440411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 626
Target Start/End: Complemental strand, 1992257 - 1992209
Alignment:
Q  578 atgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||| |||||||||||||||| | |||||||| |||||    
T  1992257 atgttcgattctctctagtgtcaatttaggtgtgctaatttagcttctt 1992209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 627
Target Start/End: Complemental strand, 8597775 - 8597708
Alignment:
Q  560 cctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||| ||||  || |||| ||||||||||||| |||||| |||||| |||||||| ||||||    
T  8597775 cctcctcctcaaggtctcaagttcaattctctccagtgccaatttgggtgggctaatttagcttcttc 8597708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 9626081 - 9626128
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggt 608  Q
    ||||||||||||||  ||||||||||||||||| ||||||| ||||||    
T  9626081 ctcctcctcgaggtctcatgttcgattctctccggtgtcaacttaggt 9626128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 972 - 1038
Target Start/End: Original strand, 17850903 - 17850970
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||| | ||| |||||||| ||||||||||| |||||||||||||| || |||| ||||||||||    
T  17850903 cttctagacgaaccgaatcacaccggaatgagagggatcctgaggtcgtgcaagtatgggactgcatg 17850970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 18263908 - 18263955
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||    
T  18263908 gttcgattctccccagtgccaatttaggtgggctaatttagcttcttc 18263955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 12633074 - 12633124
Alignment:
Q  577 catgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||||||||| |||||||||| ||||  |||||||| ||||||    
T  12633074 catgttcgattctctccaatgtcaatttaagtggactaatttagcttcttc 12633124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 981 - 1038
Target Start/End: Complemental strand, 17027683 - 17027625
Alignment:
Q  981 aaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||| ||||||||||||||||||| ||||| |||| ||| ||||||| ||||||||||    
T  17027683 aaactaaatcacatcggaatgagagggatccagaggccgtgcaggtatgggactgcatg 17027625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Complemental strand, 32250858 - 32250812
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    |||||||||||||| ||| ||||||| |||||||||||||| |||||    
T  32250858 gttcgattctctccggtgacaatttaagtgggttaatttagcttctt 32250812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 982 - 1031
Target Start/End: Original strand, 27334156 - 27334205
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    |||||||||||| ||||| ||||| | |||||||||||| ||||||||||    
T  27334156 aactgaatcacaccggaacgagagggttcctgaggtcgtgcaggtatgga 27334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 982 - 1031
Target Start/End: Original strand, 27394896 - 27394945
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatgga 1031  Q
    |||||||||||| ||||| ||||| | |||||||||||| ||||||||||    
T  27394896 aactgaatcacaccggaacgagagggttcctgaggtcgtgcaggtatgga 27394945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 775 - 856
Target Start/End: Complemental strand, 31419035 - 31418955
Alignment:
Q  775 tgatacaaagaggttacaataaattagattgaagatctctcaaagaacaatccttaatttttatcaatttttcatgtcactc 856  Q
    ||||||||||| ||||||| |||||| ||| |  | |||||||||||||||| ||||||| | || |||||||| |||||||    
T  31419035 tgatacaaagaagttacaagaaattatattaacaagctctcaaagaacaatctttaatttct-tccatttttcaagtcactc 31418955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 577 - 618
Target Start/End: Complemental strand, 33456664 - 33456623
Alignment:
Q  577 catgttcgattctctccagtgtcaatttaggtgggttaattt 618  Q
    ||||||||||||| ||  ||||||||||||||||||||||||    
T  33456664 catgttcgattctttctggtgtcaatttaggtgggttaattt 33456623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 107699 - 107557
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||| || || |||||||||||||||||| ||| |||||||||||||    
T  107699 tgtaacgcctccgcttggtgggcatgtaacacccgaggctgatgaggacggggagtggtccggttcctggcatgcttctaggaaaaactgaatcacatcg 107600  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| ||| |||||| ||||||||||| ||||||||||    
T  107599 gaatgagagggattctgaggccgtacaggtatgggactgcatg 107557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 10210 - 10352
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||||||||||||||||| ||| |||||||||||||    
T  10210 tgtaacgcctgcgcttggtgggcatgtaacgcccgaggctgatgagggtggggagtggtccggctcctggcatgcttctaggtaaaactgaatcacatcg 10309  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| ||| || |||| ||||||||||    
T  10310 gaatgagagggatcctgaggccgtgcatgtatgggactgcatg 10352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 901 - 1038
Target Start/End: Complemental strand, 35759844 - 35759702
Alignment:
Q  901 tgtaacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcg 996  Q
    |||||||||||| ||||||||  |||||||||||||||||||||| |||||| |||| |||||||||| ||||||||||||| ||| | |||||||||||    
T  35759844 tgtaacgcctccacttggtgggtatgtaacgcccgaggctgatgacggcggggagtggtctggctcctagcatgcttctaggaaaaattgaatcacatcg 35759745  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||||    
T  35759744 gaatgagagggatcctgaggccgtgcaggtatgggactgcatg 35759702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 903 - 1038
Target Start/End: Complemental strand, 35761148 - 35761008
Alignment:
Q  903 taacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcgg-gagtg-tctggctcctggcatgcttctaggcaaact-gaatcacatcgga 998  Q
    |||||||||||||||||||  |||||||| ||||||||||||| || || ||||| |||||||||||||||||||||||| ||| | |||||||||||||    
T  35761148 taacgcctccgcttggtgggtatgtaacgtccgaggctgatgagggtggcgagtggtctggctcctggcatgcttctaggaaaaattgaatcacatcgga 35761049  T
Q  999 atgagagtgatcctgaggtcgtacaggtatg-gactgcatg 1038  Q
    ||||||| |||||||||| ||| |||||||| |||||||||    
T  35761048 atgagagggatcctgaggccgtgcaggtatgagactgcatg 35761008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 901 - 1038
Target Start/End: Original strand, 2328225 - 2328367
Alignment:
Q  901 tgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcgg-gagtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |    
T  2328225 tgtaacgcctccgcttggtgggcatgtaacacccaaggctgatgagggcggagagtggtctggctcctggcatgcttttaggcaaaactgaatcacattg 2328324  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    |||||||||  ||  ||||| ||||||||||| ||||||||||    
T  2328325 gaatgagagaaattatgaggccgtacaggtatgggactgcatg 2328367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 920 - 1038
Target Start/End: Complemental strand, 20061407 - 20061285
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggc-aaactgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||||||||||||||||| |||||| |||| || ||||| |||||  ||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  20061407 ggcatgtaacgcccgaggctgatgagggcggggagtggtccggctcttggcaatcttctaggctaaactgaatcacatcagaatgagagggatcctgagg 20061308  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
    |||| ||||||| ||||||||||    
T  20061307 tcgtgcaggtatgggactgcatg 20061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 17745283 - 17745218
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||||| ||||||||||| ||||||    
T  17745283 ctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggt-ggttaatttagcttcttc 17745218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 3799955 - 3800020
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||| ||| || ||||||||||||| |||| ||||||||||||| |||||||| |||||    
T  3799955 ctcctcctcgaagtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttctt 3800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 923 - 1030
Target Start/End: Complemental strand, 46693950 - 46693839
Alignment:
Q  923 atgtaacgcccgaggctgatgaaggcg-ggagtg-tctggctcctggcatgcttctaggcaaac--tgaatcacatcggaatgagagtgatcctgaggtc 1018  Q
    ||||||| |||||||||||||| |||  |||||| || | ||| || ||||||||||||||||   ||||||||||||||||||||| |||||| |||||    
T  46693950 atgtaacacccgaggctgatgagggctaggagtggtccgactcttgtcatgcttctaggcaaaagttgaatcacatcggaatgagagggatcctaaggtc 46693851  T
Q  1019 gtacaggtatgg 1030  Q
    || || ||||||    
T  46693850 gtgcatgtatgg 46693839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 972 - 1038
Target Start/End: Original strand, 2634909 - 2634976
Alignment:
Q  972 cttctaggcaaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||||||||||  |||||||||||||||||||| |||| |||||| || ||||||| ||||||||||    
T  2634909 cttctaggcaaatcgaatcacatcggaatgagagggatcatgaggttgtgcaggtatgggactgcatg 2634976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 17439966 - 17440013
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggt 608  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||    
T  17439966 ctcctcctcgaggtctcatgtttgattctctccagtgtcaatttaggt 17440013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 12587319 - 12587384
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||||||||| ||| ||||||||||||| |||||||| ||||||    
T  12587319 ctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaatttagcttcttc 12587384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 619
Target Start/End: Complemental strand, 24047129 - 24047071
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    ||||||||||||||| || ||||||||||| |||||| |||||||||| || |||||||    
T  24047129 ctcctcctcgaggtttcaagttcgattctccccagtgccaatttaggttggctaattta 24047071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 734
Target Start/End: Original strand, 6628716 - 6628792
Alignment:
Q  659 gcaaaataaatccacaagcataatcaaagaacatggataagagagtagag-aaacaacacaccaatgtttgtttatc 734  Q
    |||||| || ||||||| |||||||||||| ||  | |||||||||| || ||||||||||||||| ||||||||||    
T  6628716 gcaaaacaagtccacaaacataatcaaagatcaaagttaagagagtaaaggaaacaacacaccaatatttgtttatc 6628792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 627
Target Start/End: Original strand, 2220024 - 2220087
Alignment:
Q  564 ctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    |||||||||||  || ||||||||||||||| ||||||||||  |||| |||||||| ||||||    
T  2220024 ctcctcgaggtctcaggttcgattctctccaatgtcaatttaaatgggctaatttagtttcttc 2220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 620
Target Start/End: Complemental strand, 40814431 - 40814376
Alignment:
Q  565 tcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttag 620  Q
    |||| |||||| || ||||||||||||| |||||||||||| ||||| ||||||||    
T  40814431 tccttgaggtttcaggttcgattctctctagtgtcaatttaagtgggctaatttag 40814376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 6122843 - 6122909
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||| ||||  || ||||||||| ||| ||||||||||| |||||| |||||||| ||||||    
T  6122843 ctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 6122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 16893443 - 16893509
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||| ||||| ||||||||||  ||||| |||||||| ||||||    
T  16893443 ctcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttcttc 16893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Original strand, 44961833 - 44961879
Alignment:
Q  580 gttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||| ||||||||||| |||||| |||||||| |||||    
T  44961833 gttcgattctctctagtgtcaatttgggtgggctaatttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 42949319 - 42949254
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||  ||| || |||||||||| ||| ||||||| ||||| |||||||| |||||    
T  42949319 ctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctt 42949254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 986 - 1038
Target Start/End: Complemental strand, 50003222 - 50003169
Alignment:
Q  986 gaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    |||||||||||||||||||| |||||||||| | | ||||||| ||||||||||    
T  50003222 gaatcacatcggaatgagagggatcctgaggccatgcaggtataggactgcatg 50003169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 50901631 - 50901695
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||  ||  |||||||||||| |||| ||||||||||||| |||||||| |||||    
T  50901631 ctcctcctcgaggtctcaaattcgattctctc-agtgccaatttaggtgggctaatttagcttctt 50901695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 920 - 1038
Target Start/End: Complemental strand, 18337 - 18215
Alignment:
Q  920 ggcatgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaa-actgaatcacatcggaatgagagtgatcctgagg 1016  Q
    |||||||||||| |||||| ||||| |||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  18337 ggcatgtaacgctcgaggcggatgagggcggggagtggtccggctcctggcatgcttctaggcaacactgaatcacatcggaatgagagggatccagagg 18238  T
Q  1017 tcgtacaggtat-ggactgcatg 1038  Q
     ||| ||||||| ||||||||||    
T  18237 ccgtgcaggtatgggactgcatg 18215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 981 - 1038
Target Start/End: Original strand, 18960 - 19018
Alignment:
Q  981 aaactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtat-ggactgcatg 1038  Q
    ||||| ||||||||||||||||||| ||||| |||| ||| ||||||| ||||||||||    
T  18960 aaactaaatcacatcggaatgagagggatccagaggccgtgcaggtatgggactgcatg 19018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 901 - 1030
Target Start/End: Complemental strand, 2446 - 2313
Alignment:
Q  901 tgtaacgcctccgcttggtggc-atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaa-ctgaatcacatcg 996  Q
    ||||| |||||||||||||||  |||||||||||||||||||||| |||||| |||| ||  ||| || ||||||||||||| ||| |||||||||||||    
T  2446 tgtaatgcctccgcttggtgggtatgtaacgcccgaggctgatgagggcggggagtggtccagcttctagcatgcttctaggaaaaactgaatcacatcg 2347  T
Q  997 gaatgagagtgatcctgaggtcgtacaggtatgg 1030  Q
    ||||||||  |||||| ||| ||| |||||||||    
T  2346 gaatgagaaggatcctaaggccgtgcaggtatgg 2313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 900 - 951
Target Start/End: Complemental strand, 2607 - 2555
Alignment:
Q  900 gtgtaacgcctccgcttggtgg-catgtaacgcccgaggctgatgaaggcggg 951  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  2607 gtgtaacgcctccgcttggtgggcatgtaacgcccgaggctgatgagggcggg 2555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 923 - 1016
Target Start/End: Original strand, 245019 - 245115
Alignment:
Q  923 atgtaacgcccgaggctgatgaaggcggg-agtg-tctggctcctggcatgcttctaggcaaac-tgaatcacatcggaatgagagtgatcctgagg 1016  Q
    ||||||||||| |||||||||| |||||| |||| || ||||| |||||||| |||||  |||  ||||||||||||||||||||| ||||||||||    
T  245019 atgtaacgcccaaggctgatgagggcggggagtggtccggctcttggcatgcatctagaaaaatatgaatcacatcggaatgagagggatcctgagg 245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 49355 - 49413
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    |||||| |||||||  || |||||||||||||| ||||||||||| |||||||||||||    
T  49355 ctcctcttcgaggtatcaggttcgattctctccggtgtcaatttaagtgggttaattta 49413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 562 - 619
Target Start/End: Complemental strand, 45785 - 45728
Alignment:
Q  562 tcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaattta 619  Q
    ||||||| |||||  ||||||||||||||||  |||||||||||||||||||| ||||    
T  45785 tcctccttgaggtctcatgttcgattctctctggtgtcaatttaggtgggttagttta 45728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 982 - 1029
Target Start/End: Complemental strand, 18285 - 18238
Alignment:
Q  982 aactgaatcacatcggaatgagagtgatcctgaggtcgtacaggtatg 1029  Q
    |||||||||||||||||||||||| |||||||||| |||  |||||||    
T  18285 aactgaatcacatcggaatgagagggatcctgaggccgtgtaggtatg 18238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 15350 - 15284
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattcttc 627  Q
    ||||||||||||||  || |||||||||||||   || ||||||||||||| |||||||| ||||||    
T  15350 ctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttc 15284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 14992 - 14927
Alignment:
Q  561 ctcctcctcgaggttacatgttcgattctctccagtgtcaatttaggtgggttaatttagattctt 626  Q
    ||||||||||||||  ||| || |||||||||| ||| ||||||| ||||| |||||||| |||||    
T  14992 ctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctt 14927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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