View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410-Insertion-2 (Length: 1031)

Name: NF5410-Insertion-2
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410-Insertion-2
NF5410-Insertion-2
[»] chr6 (7 HSPs)
chr6 (7-995)||(12438610-12439602)
chr6 (165-219)||(12340035-12340089)
chr6 (169-228)||(2423685-2423744)
chr6 (156-194)||(26602621-26602659)
chr6 (160-221)||(26592396-26592457)
chr6 (174-220)||(23142742-23142788)
chr6 (169-218)||(3291756-3291805)
[»] chr2 (9 HSPs)
chr2 (358-922)||(2431961-2432525)
chr2 (16-125)||(2433258-2433367)
chr2 (167-222)||(23492978-23493033)
chr2 (165-222)||(30832100-30832157)
chr2 (165-221)||(38763622-38763678)
chr2 (174-221)||(17695404-17695451)
chr2 (174-221)||(26607960-26608007)
chr2 (167-210)||(33434108-33434151)
chr2 (165-228)||(34437984-34438047)
[»] chr5 (9 HSPs)
chr5 (359-918)||(41653147-41653706)
chr5 (430-922)||(41623373-41623865)
chr5 (359-918)||(41645945-41646507)
chr5 (11-127)||(41621083-41621199)
chr5 (174-221)||(30512677-30512724)
chr5 (174-221)||(30553017-30553064)
chr5 (174-221)||(40530216-40530263)
chr5 (172-221)||(7827916-7827965)
chr5 (165-222)||(9637892-9637949)
[»] chr8 (9 HSPs)
chr8 (160-222)||(28072118-28072180)
chr8 (355-468)||(5022947-5023060)
chr8 (177-221)||(45425664-45425708)
chr8 (174-221)||(42972503-42972550)
chr8 (174-228)||(51180-51233)
chr8 (165-219)||(6323321-6323375)
chr8 (179-221)||(10097991-10098033)
chr8 (175-221)||(31271095-31271141)
chr8 (174-219)||(17719253-17719298)
[»] chr1 (6 HSPs)
chr1 (165-222)||(11642238-11642295)
chr1 (165-227)||(15444469-15444531)
chr1 (179-222)||(3158017-3158060)
chr1 (174-221)||(26093468-26093515)
chr1 (174-221)||(35367642-35367689)
chr1 (165-222)||(50071275-50071332)
[»] chr7 (10 HSPs)
chr7 (165-221)||(25530982-25531038)
chr7 (165-222)||(14063396-14063453)
chr7 (165-222)||(14373424-14373481)
chr7 (165-222)||(29121583-29121640)
chr7 (172-221)||(44180286-44180335)
chr7 (174-221)||(5524461-5524508)
chr7 (174-221)||(28103814-28103861)
chr7 (168-222)||(7930133-7930187)
chr7 (172-221)||(24516288-24516337)
chr7 (169-222)||(34000508-34000561)
[»] chr4 (13 HSPs)
chr4 (165-222)||(11024881-11024938)
chr4 (172-221)||(35380331-35380380)
chr4 (172-221)||(42517636-42517685)
chr4 (174-221)||(33790731-33790778)
chr4 (178-221)||(34321715-34321758)
chr4 (174-221)||(44536196-44536243)
chr4 (174-221)||(51625157-51625204)
chr4 (175-221)||(11288631-11288677)
chr4 (176-221)||(5618616-5618661)
chr4 (172-221)||(7061662-7061711)
chr4 (165-222)||(17121315-17121372)
chr4 (165-222)||(23915421-23915478)
chr4 (165-194)||(39157864-39157893)
[»] chr3 (5 HSPs)
chr3 (170-222)||(25090044-25090096)
chr3 (174-221)||(10366636-10366683)
chr3 (174-221)||(24569094-24569141)
chr3 (179-221)||(52290967-52291009)
chr3 (172-221)||(43719340-43719389)
[»] scaffold0049 (1 HSPs)
scaffold0049 (163-222)||(55399-55458)


Alignment Details
Target: chr6 (Bit Score: 892; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 892; E-Value: 0
Query Start/End: Original strand, 7 - 995
Target Start/End: Original strand, 12438610 - 12439602
Alignment:
Q  7 acaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12438610 acaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttc 12438709  T
Q  107 cagcaaaaaatatatcctgcatatcaagtgtacattcagactatctaactgttctatctgagttttacacgattattaagaaaatgatgaatagtattga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12438710 cagcaaaaaatatatcctgcatatcaagtgtacattcagactatctaattgttctatctgagttttacacgattattaagaaaatgatgaatagtattga 12438809  T
Q  207 ttttaatggtaaaatacgtatctgagtatctccctctatgtatcatttattaaaacatttttattaattatatttgaggaagtacnnnnnnnacccgaaa 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  12438810 ttttaatggtaaaatacgtatctgagtatctccctttatgtatcatttattaaaacatttttattaattatatttgaggaagtactttttttacccgaaa 12438909  T
Q  307 taaatatcttaagaaagtaattaaaattgtaaagnnnnnnnnttaaactaattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccat 406  Q
    |||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12438910 taaatatcttaagaaagtaattaacattgtaaagaaaaaaaattaaactaattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccat 12439009  T
Q  407 cacggttaggagatacatgaatattgagattcaaaagataggataaaagacttccatctccacctgtctttgttgttgcattgttgataatcttttcaag 506  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439010 cacggttaggagatgcatgaatattgagattcaaaagataggataaaagacttccatctccacctgtctttgttgttgcattgttgataatcttttcaag 12439109  T
Q  507 aatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaatgctgtgagggaaacagattagtgaaactaaaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439110 aatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaatgctgtgagggaaacagattagtgaaactaaaa 12439209  T
Q  607 ctctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgaca 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439210 ctctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgaca 12439309  T
Q  707 aagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattcgaatga 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12439310 aagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattggaatga 12439409  T
Q  807 tctcacacggttcgtactcaacagctccaatgtgcagatttttcttagctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataa 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439410 tctcacacggttcgtactcaacagctccaatgtgcagatttttcttagctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataa 12439509  T
Q  907 gttacaatttctgca-caataaagcgatatctttgagc-aatttgagatcattgg-tttgagca-ctcttgtgcaatttctttagaagaaata 995  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  12439510 gttacaatttctgcaccaataaagcgatatctttgagcaaatttgagatcattggttttgagcacctcttgtgcaatttctttagaagaaata 12439602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 12340089 - 12340035
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaa 219  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||||| ||||    
T  12340089 tgagttttacacgattattaagaaaatgattagtagtgttgattttaatgataaa 12340035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 2423744 - 2423685
Alignment:
Q  169 ttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaatacgtatc 228  Q
    ||||||| ||||||| |||||||||| |||| | |||||||||||||||||||| |||||    
T  2423744 ttttacatgattattcagaaaatgattaatattgttgattttaatggtaaaatatgtatc 2423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 26602659 - 26602621
Alignment:
Q  156 tgttctatctgagttttacacgattattaagaaaatgat 194  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  26602659 tgttctatttgagttttacacgattattaagaaaatgat 26602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 26592457 - 26592396
Alignment:
Q  160 ctatctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||| |||||||||  | ||||||||| ||||||| |||| |||||||||||||||||||||    
T  26592457 ctatttgagttttaggcaattattaaggaaatgattaataatattgattttaatggtaaaat 26592396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 23142788 - 23142742
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaa 220  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  23142788 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaa 23142742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 3291756 - 3291805
Alignment:
Q  169 ttttacacgattattaagaaaatgatgaatagtattgattttaatggtaa 218  Q
    |||| ||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  3291756 ttttgcacgattattaaggaaatgattaattgtatcgattttaatggtaa 3291805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 358 - 922
Target Start/End: Complemental strand, 2432525 - 2431961
Alignment:
Q  358 ttaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagac 457  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||  |||||  ||||||| ||||||||||||| |||||||    
T  2432525 ttaacctgaataacagctttaatgttgttgattgtcaaatgaaatccatcagggttggaagagccatgatcattgagactcaaaagataggacaaaagac 2432426  T
Q  458 ttccatctccacctgtctttgttgttgcattgttgataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattccact 557  Q
    ||||||||||| | ||||||||| |    | |||||| || ||||||||||||  ||| ||||| || || |||||| ||||||||  || |||||||||    
T  2432425 ttccatctccatcagtctttgttttcttttcgttgatgatattttcaagaatcatatcaccagtcttgtgaattttcttcaatttacaaaccattccact 2432326  T
Q  558 aataacatgtagccaatgctgtgagggaaacagattagtgaaactaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgc 657  Q
    ||| ||||||| |||||| || |||||||||| |||||||| ||| |||||||| |||| ||||  |||||||||||||||  ||||| |||||||||||    
T  2432325 aatcacatgtaaccaatgttgggagggaaacaaattagtgacactgaaactctctgccaactttatagtttccttgatgaacttggtatatgcttcttgc 2432226  T
Q  658 tccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaa 757  Q
    |||||||||||||||||||||| ||| || ||||| |||||||||  || |||||||||||||||| ||||||||||  ||| ||||||||||  |||||    
T  2432225 tccttgcatttatcaccaaaagttgccctagaaatgatgttatattgcatagataaaatttcatgagtgaggttgataatagttccagtgtttatagaaa 2432126  T
Q  758 tatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacggttcgtactcaacagctccaatgtgcagatttttcttagctc 857  Q
    ||  | |  | |||||| ||||||||||||  |||||||||| ||||||||||||||| || | ||||||||| || |||||||| |||||||||||||     
T  2432125 tacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcacacgtttagcactcaacagttctaatgtgcatatttttcttagctg 2432026  T
Q  858 cttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttctgcac 922  Q
    | ||||||| |||||||||| || ||| |||| |||||||| ||||||||  |||||||| ||||    
T  2432025 cctccaataatctccataggatgcaaagacaatgttggtgctaccataagaaacaatttcagcac 2431961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 2433367 - 2433258
Alignment:
Q  16 ctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaa 115  Q
    |||||||||||||||||||||||||  ||||| || ||||||| |||||| ||||| |||||||||||||||| || || |||  |||||||||||||||    
T  2433367 ctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaa 2433268  T
Q  116 atatatcctg 125  Q
      ||||||||    
T  2433267 tgatatcctg 2433258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 23493033 - 23492978
Alignment:
Q  167 agttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||    
T  23493033 agttttacacgattattaaaaaaatgattaacagtgttgattttaatggtaaaata 23492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 30832100 - 30832157
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||||||| |||||||| || |||||| ||||||||||||| ||||||    
T  30832100 tgagttttacacgattataaagaaaataattaatagtgttgattttaatggcaaaata 30832157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 38763678 - 38763622
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||| |||||||| ||||| | | |||| |||||||||||||||||||    
T  38763678 tgagttttacacggttattaaggaaatggttagtagtgttgattttaatggtaaaat 38763622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 17695451 - 17695404
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||||    
T  17695451 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaat 17695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 26607960 - 26608007
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  26607960 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 33434151 - 33434108
Alignment:
Q  167 agttttacacgattattaagaaaatgatgaatagtattgatttt 210  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||    
T  33434151 agttttacacgaatattaagaaaatgattaataatattgatttt 33434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 34437984 - 34438047
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaatacgtatc 228  Q
    ||||||||||||| ||||||| |||||||| |||| | ||||||||||||  |||||| |||||    
T  34437984 tgagttttacacggttattaaaaaaatgattaataatgttgattttaatgacaaaatatgtatc 34438047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 3e-63; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 359 - 918
Target Start/End: Complemental strand, 41653706 - 41653147
Alignment:
Q  359 taacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagact 458  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||| ||   ||||    |||||||||||||||||||| ||||||||    
T  41653706 taacctgaataacggctttaatgttgttgattgtcaaatgaaatccatcaggattagaagcatcatgt---ttgagattcaaaagataggacaaaagact 41653610  T
Q  459 tccatctccacctgtctttgttgttgcattgttg---ataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattcca 555  Q
    ||||||| |||  |||||| ||||| | ||||||   || || |||| ||||| |  ||| ||| || |||| | | || ||||||||   | |||||||    
T  41653609 tccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcaccacttctatgcaatctcttcaatttatgcaccattcca 41653510  T
Q  556 ctaataacatgtagccaatgctgtgagggaaacagattagtgaa-actaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttct 654  Q
    ||||| ||||||||||||||||| |||||||||| |||| |||| ||| |||||||||||||       || |||||| |||||   | || |||||||     
T  41653509 ctaatcacatgtagccaatgctgggagggaaacaaatta-tgaatactgaaactctcagccacagacatagattccttcatgaacaagatatatgcttca 41653411  T
Q  655 tgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaag 754  Q
    |  ||||| || ||||||||||||| ||| |||||| | ||| |||||| |||||||||||||||||   | ||||||||  |||||||||||||   ||    
T  41653410 ttgtccttacaattatcaccaaaagatgcccttgaagtgatgctatatgtcaaagataaaatttcatctgtaaggttgatggtagatccagtgttaatag 41653311  T
Q  755 aaatatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacggttcgtactcaacagctccaatgtgcagatttttcttag 854  Q
    |||||| | |||| || || |||||||||||||  | |||||||| | ||||||||||||| ||   ||||||||||||||||||||| ||||| | |||    
T  41653310 aaatatatctaattaatttcgacacctcttcctctcgaattgattggtatgatctcacacgtttaacactcaacagctccaatgtgcatattttgcgtag 41653211  T
Q  855 ctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttct 918  Q
    || | ||||||| ||||||||||| |||||  ||| ||  |||||||||||||  |||||||||    
T  41653210 ctgcctccaatactctccatagggggaaaaagcaatgtcagtgcaaccataagaaacaatttct 41653147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 430 - 922
Target Start/End: Original strand, 41623373 - 41623865
Alignment:
Q  430 ttgagattcaaaagataggataaaagacttccatctccacctgtctttgttgttgcattgttgataatcttttcaagaatctcatctccagttttatgga 529  Q
    ||||||||||||||  | |||| ||| |||||||||||||  ||||||||| |||| |||||||| ||||| ||||||| |  ||| ||| || |||| |    
T  41623373 ttgagattcaaaaggcaagatagaaggcttccatctccactggtctttgttattgctttgttgatgatcttctcaagaaccatatcaccacttctatgca 41623472  T
Q  530 ttttcctcaatttaacaatcattccactaataacatgtagccaatgctgtgagggaaacagattagtgaaactaaaactctcagccatctttgcagtttc 629  Q
    || || ||||||||   | |||||||||||| |||||||||||||| || |||||||||| ||||| || | | | ||||||| ||| | ||| |  |||    
T  41623473 ttgtcttcaatttatgtaccattccactaatcacatgtagccaatgttgagagggaaacaaattagggatattgacactctcaaccacccttgtacattc 41623572  T
Q  630 cttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgagg 729  Q
    |||||||||   | ||||||||||||| || ||||||||||||||||||| ||| |||||||| |||||||||| || |||| | |||||||   | |||    
T  41623573 cttgatgaacaagataaatgcttcttgatcattgcatttatcaccaaaagttgcccttgaaatgatgttatatgtcatagatgatatttcatctgtaagg 41623672  T
Q  730 ttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacggttcgtactcaaca 829  Q
    |||||  ||||||||||||||  |||||||| | |||| || ||||||| ||||||||  | |||||||| ||||||| || |||| || | ||||||||    
T  41623673 ttgatagtagatccagtgtttatagaaatatatctaattaattttgacaactcttcctctcgaattgattggaatgatttcgcacgtttagcactcaaca 41623772  T
Q  830 gctccaatgtgcagatttttcttagctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttctgcac 922  Q
     |||||||||||| |||||| |||  | | ||||||||||||||   |||||||| | || | | |||| |||||| | || |||||||||||    
T  41623773 actccaatgtgcatattttttttatattcctccaatagtctccagcaggtgaaaagaaaatgctagtgctaccataggctataatttctgcac 41623865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 359 - 918
Target Start/End: Complemental strand, 41646507 - 41645945
Alignment:
Q  359 taacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagact 458  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||  | |||| |||  ||| |   |||||||||||||||||||| ||||||||    
T  41646507 taacctgaataacggctttaatgttgttgattgtcaaatgaaatccatccggattagaagagccatcatgtttgagattcaaaagataggacaaaagact 41646408  T
Q  459 tccatctccacctgtctttgttgttgcattgttg---ataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattcca 555  Q
    ||||||| |||  |||||| ||||| | ||||||   || || |||| ||||| |  ||| ||| || |||| | | || ||||||||   |||||||||    
T  41646407 tccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcaccacttctatgcaatctcttcaatttatgcatcattcca 41646308  T
Q  556 ctaataacatgtagccaatgctgtgagggaaacagattagtgaaac-taaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttct 654  Q
     |||| ||||||||||||||||| || || |||| |||| ||||   | ||||||||||||| |     || |||||| |||||   | || ||||||||    
T  41646307 gtaatcacatgtagccaatgctgggatgggaacaaatta-tgaatggtgaaactctcagccaccgacatagattccttcatgaacaagatatatgcttct 41646209  T
Q  655 tgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaag 754  Q
    |  ||||| || ||||||||||||| ||| ||||||   |||||||||| || || |||||||||||   ||| ||||||| |||| ||  |||||  ||    
T  41646208 ttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagctaaaatttcatctgtgaagttgattgtagaccccttgtttatag 41646109  T
Q  755 aaatatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacggttcgtactcaacagctccaatgtgcagatttttcttag 854  Q
    ||| || | |||| || ||||| ||||||||||  | |||||||| ||||||||||||||| ||   ||||||||||||||||||||| ||||||| ||     
T  41646108 aaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacacgtttaacactcaacagctccaatgtgcatatttttcgtac 41646009  T
Q  855 ctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttct 918  Q
    || | ||||||| |||||||||||||||||  ||| ||  |||||||||||||  |||||||||    
T  41646008 ctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttct 41645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 41621083 - 41621199
Alignment:
Q  11 catgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagc 110  Q
    |||| ||||||||| |||||||| |||| |||| ||| || ||||||| |||||| || ||||||||||| | |||||||| ||||| | |||||||| |    
T  41621083 catgtctaacttcttcttgagcccttttcaatattctagggtttttcagcatttctgagaaggcccattccatagttgtagttgatggctcacttccacc 41621182  T
Q  111 aaaaaatatatcctgca 127  Q
    || ||  ||||||||||    
T  41621183 aataataatatcctgca 41621199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 30512677 - 30512724
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||||    
T  30512677 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaat 30512724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 30553017 - 30553064
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||||    
T  30553017 cacgattattaaggaaatgattaattgtattgatttcaatggtaaaat 30553064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 40530216 - 40530263
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  40530216 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 40530263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 7827916 - 7827965
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||||||||| || ||| || ||||||| |||||||||||    
T  7827916 tacacgattattaagaaaataattaattgtgttgatttcaatggtaaaat 7827965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 9637949 - 9637892
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||||| |||| ||||||| ||||||| |||| | |||||||||||| |||||||    
T  9637949 tgagttttatacgagtattaaggaaatgattaataatgttgattttaatgataaaata 9637892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 28072118 - 28072180
Alignment:
Q  160 ctatctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||||| | |||||||| ||||||| |||||| ||||||||||||| ||||||    
T  28072118 ctatctgagttttacatggttattaaggaaatgattaatagtgttgattttaatggcaaaata 28072180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 355 - 468
Target Start/End: Original strand, 5022947 - 5023060
Alignment:
Q  355 taattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaa 454  Q
    ||||||||||| ||||  |||||||| |||||| |||||||||||||||||    ||||||||||  |||     |||||||||||||||||||| |  |    
T  5022947 taattaacctggataatggctttaatattgttgattgtcaaatgaaatccaatcgggttaggagagccatcgtctttgagattcaaaagataggacagta 5023046  T
Q  455 gacttccatctcca 468  Q
    ||||||||||||||    
T  5023047 gacttccatctcca 5023060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 45425664 - 45425708
Alignment:
Q  177 gattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||||||| ||| || |||||||||||||||||||    
T  45425664 gattattaagaaaatgattaattgtgttgattttaatggtaaaat 45425708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 42972503 - 42972550
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  42972503 cacgattattaagaaaatgattaattgttttgatttcaatggtaaaat 42972550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 51233 - 51180
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaatacgtatc 228  Q
    ||||||||||||||||||||| ||| || ||||||||||| |||||||| |||||    
T  51233 cacgattattaagaaaatgattaattgtgttgattttaat-gtaaaataagtatc 51180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 6323321 - 6323375
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaa 219  Q
    |||||||||||| |||||||| |||||||| |||| | |||||||||||| ||||    
T  6323321 tgagttttacacaattattaaaaaaatgattaataattttgattttaatgataaa 6323375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 10097991 - 10098033
Alignment:
Q  179 ttattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  10097991 ttattaagaaaatgattaattgtattgattttgatggtaaaat 10098033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 31271141 - 31271095
Alignment:
Q  175 acgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||  || || |||||||||||||||||||    
T  31271141 acgattattaagaaaatgattgattgtgttgattttaatggtaaaat 31271095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 17719253 - 17719298
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaa 219  Q
    |||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  17719253 cacgattattaaaaaaatgattaattgtaatgattttaatggtaaa 17719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 11642295 - 11642238
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||||||| | |||||||||||||||| |||| | ||||||||||||||||||||    
T  11642295 tgagttttacatggttattaagaaaatgattaatattgttgattttaatggtaaaata 11642238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 15444469 - 15444531
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaatacgtat 227  Q
    ||||||||| | | |||||||| ||||||| |||||| |||||||||||||||||||| ||||    
T  15444469 tgagttttatatggttattaaggaaatgattaatagtgttgattttaatggtaaaatatgtat 15444531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 3158017 - 3158060
Alignment:
Q  179 ttattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||||| |||| |||||||||||||| |||||||    
T  3158017 ttattaagaaaatgattaataatattgattttaatgataaaata 3158060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 26093515 - 26093468
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  26093515 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 26093468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 35367642 - 35367689
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || |||||||| ||||||||||    
T  35367642 cacgattattaagaaaatgattaattgtgttgattttgatggtaaaat 35367689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 50071332 - 50071275
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||| |||||| ||| | || ||||||||| |||||||| ||||||||    
T  50071332 tgagttttacacgaatattaataaagtaattaatagtattaattttaattgtaaaata 50071275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 25530982 - 25531038
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||| ||| |||||||| |||||| ||||||||||||| |||||    
T  25530982 tgagttttacacgattactaaaaaaatgattaatagtgttgattttaatggcaaaat 25531038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 14063453 - 14063396
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||| ||||||| ||||||| | || | ||||||||||||||||||||    
T  14063453 tgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaata 14063396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 14373481 - 14373424
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||| ||||||| ||||||| | || | ||||||||||||||||||||    
T  14373481 tgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaata 14373424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 29121640 - 29121583
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||||||||| ||| |||| ||||||| |||| | ||||||||||||||||||||    
T  29121640 tgagttttacacggttactaaggaaatgatcaatattgttgattttaatggtaaaata 29121583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 44180335 - 44180286
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  44180335 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 44180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 5524508 - 5524461
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  5524508 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 5524461  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 28103861 - 28103814
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  28103861 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 28103814  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 7930187 - 7930133
Alignment:
Q  168 gttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||| |||||||||||||||| | |||| ||||||| ||||| ||||||    
T  7930187 gttttacacggttattaagaaaatgattagtagtgttgatttcaatggaaaaata 7930133  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 24516288 - 24516337
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||| |||||||| ||| || ||||||| |||||||||||    
T  24516288 tacacgattattaataaaatgattaattgtgttgatttcaatggtaaaat 24516337  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 34000561 - 34000508
Alignment:
Q  169 ttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||| | |||||||||||||||| ||| |||| |||| |||||||||||||    
T  34000561 ttttacatggttattaagaaaatgattaatggtatagattctaatggtaaaata 34000508  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 11024881 - 11024938
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||||   |||||||||||||| |||||| ||||||||||||||| ||||    
T  11024881 tgagttttacacggaaattaagaaaatgattaatagtgttgattttaatggtataata 11024938  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 35380331 - 35380380
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||||| |||  | |||||||||||||||||||    
T  35380331 tacacgattattaagaaaatgattaattatgttgattttaatggtaaaat 35380380  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 42517636 - 42517685
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  42517636 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 42517685  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 33790731 - 33790778
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || |||||||| ||||||||||    
T  33790731 cacgattattaagaaaatgattaattgtgttgattttgatggtaaaat 33790778  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 34321715 - 34321758
Alignment:
Q  178 attattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||| ||| || |||||||||||||||||||    
T  34321715 attattaagaaaatgattaattgtgttgattttaatggtaaaat 34321758  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 44536196 - 44536243
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||| ||||||| ||| || |||||||||||||||||||    
T  44536196 cacgattattaaggaaatgattaattgtgttgattttaatggtaaaat 44536243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 51625204 - 51625157
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  51625204 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 51625157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 11288631 - 11288677
Alignment:
Q  175 acgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||||||||| ||| |||||||||| ||||| |||||    
T  11288631 acgattattaagaaaatgattaattgtattgatttcaatggcaaaat 11288677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 5618661 - 5618616
Alignment:
Q  176 cgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||| |||||||||| | || |||||||||||||||||||    
T  5618661 cgattattaaaaaaatgatgagttgtgttgattttaatggtaaaat 5618616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 7061662 - 7061711
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||| ||||||| ||| || ||||||| |||||||||||    
T  7061662 tacacgattattaaggaaatgattaattgtgttgatttcaatggtaaaat 7061711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 17121372 - 17121315
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||||| |||||||||||||||||   || | |||||||||||| |||||||    
T  17121372 tgagttttacacaattattaagaaaatgattggtattgttgattttaatgataaaata 17121315  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 23915421 - 23915478
Alignment:
Q  165 tgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    |||||||||| |  |||||||| ||||||| | |||| ||||||||||||||||||||    
T  23915421 tgagttttacgcagttattaaggaaatgattagtagtgttgattttaatggtaaaata 23915478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 39157864 - 39157893
Alignment:
Q  165 tgagttttacacgattattaagaaaatgat 194  Q
    ||||||||||||||||||||||||||||||    
T  39157864 tgagttttacacgattattaagaaaatgat 39157893  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 25090044 - 25090096
Alignment:
Q  170 tttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||||||||||||||||||||||| | |||| || |||||||| ||||||||    
T  25090044 tttacacgattattaagaaaatgattagtagtgttaattttaattgtaaaata 25090096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 10366636 - 10366683
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  10366636 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 10366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 24569094 - 24569141
Alignment:
Q  174 cacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  24569094 cacgattattaagaaaatgattaattgtgttgatttcaatggtaaaat 24569141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 52291009 - 52290967
Alignment:
Q  179 ttattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  52291009 ttattaagaaaatgattaattgtattgattttgatggtaaaat 52290967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 43719389 - 43719340
Alignment:
Q  172 tacacgattattaagaaaatgatgaatagtattgattttaatggtaaaat 221  Q
    |||||||| ||||| |||||||| ||| || |||||||||||||||||||    
T  43719389 tacacgatcattaataaaatgattaattgtgttgattttaatggtaaaat 43719340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 55458 - 55399
Alignment:
Q  163 tctgagttttacacgattattaagaaaatgatgaatagtattgattttaatggtaaaata 222  Q
    ||||| ||||||||| |||||||||||||  | ||||  |||||||||||||||||||||    
T  55458 tctgatttttacacggttattaagaaaatatttaataaaattgattttaatggtaaaata 55399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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