View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410-Insertion-4 (Length: 954)
Name: NF5410-Insertion-4
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 281 - 942
Target Start/End: Original strand, 22548046 - 22548709
Alignment:
| Q |
281 |
ttttgtacacttgcaggaagcagagttggagcaaaaatggatggacaatgggaattctcgcaatgcgaaatggtggtactcaactttccatactgtgaca |
380 |
Q |
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| T |
22548046 |
ttttgtacacttgcaggaagtagagttggagcaaaaatgggtcgacaatgggaattctcgcaatgcgaaatggtggtactcaactttccataccgtgacc |
22548145 |
T |
|
| Q |
381 |
gccatgataggtgcaggtgttctcagccttccctatgccatggcatatctaggatggtaattcaaataaaatacaaaaataacatactttggtttctatc |
480 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22548146 |
gcaatgataggtgcaggtgttctcagccttccctatgccatggcatatctaggatggtaattcaaataaaatacaaaaataacatactatggtttctatc |
22548245 |
T |
|
| Q |
481 |
tatctcaatgtttaaaaaattgtatcgaacatgttcaaccgactgaatcgggaaatgacatgttctttgctaggtttgatccgtattataccgcagtcta |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
22548246 |
tatctcaatgtttaaaaaattgtatcgaacatgttcaaccgactgaatcgggaaatgacatgttctttgctaggtttgatccatattatactgcagtctg |
22548345 |
T |
|
| Q |
581 |
gttgaatcagattgaatttcattggttcaatcggtttttaatgttttgtcatctggcacaatagttgaaccgattgaacaatgattttagggtttcaatg |
680 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22548346 |
gttgaatcatattgaatttcatttgttcaatcggtttttaatgttttgtcatctggcacaatagttgaaccgattgaacaatgattttagggtttcaaag |
22548445 |
T |
|
| Q |
681 |
gttcaatctccggtctgatttttaaaaaagtgacgagttcacttgaagttgaaagtttactctattctttgcaggattccggggactttaatgttgttgt |
780 |
Q |
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| T |
22548446 |
gttcaatctccggtctgatttttaaaaaagtgacgagttcacttgaagttgaaagtttactctattctttgcaggattccggggactttaatgttgttgt |
22548545 |
T |
|
| Q |
781 |
tatcatggagcctgaccttaaacacaatgtggc-aatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctcggt-aaca |
878 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
22548546 |
tatcatggagcctgaccttaaacacaatgtggcaaatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctgggtaaaca |
22548645 |
T |
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| Q |
879 |
tgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattggg |
942 |
Q |
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| T |
22548646 |
tgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattggg |
22548709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 22547739 - 22548014
Alignment:
| Q |
8 |
gtaaccaaactattaatgtatctacatcattgattaatacattaaacttttattactatagctccaaaactcaactaggtcttcattttctgctctactt |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22547739 |
gtaaccaaactattactgtatctacatcattgattaatacattaaacttttattactatagctccaaaactcaactaggtcttcattttctgctctactt |
22547838 |
T |
|
| Q |
108 |
tggttctaagttattagaaaatggtttcagctacttcttctcccccttctaaggaggtaaggctttcaatcaagtttgtgttcactttacatctttaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22547839 |
tggttctaagttattagaaaatggtttcagctacttcttctctcccttctaaggaggtaaagctttcaatcaagtttgtgttcactttacatctttaaat |
22547938 |
T |
|
| Q |
208 |
tatttaagtatattttttcactactaaaagaatttagtttagtgaagaaaataaataaaatttgtcactaaacttt |
283 |
Q |
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| T |
22547939 |
tatttaagtatattttttcactactaaaagaatttagtttagtgaagaaaataaataaaatttgtcactaaacttt |
22548014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 348 - 440
Target Start/End: Complemental strand, 41893865 - 41893773
Alignment:
| Q |
348 |
aaatggtggtactcaactttccatactgtgacagccatgataggtgcaggtgttctcagccttccctatgccatggcatatctaggatggtaa |
440 |
Q |
| |
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|||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||| |
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| T |
41893865 |
aaatggtggtactcgactttccacacggtgacagccatgataggtgccggtgttctcagcctgccatatgccatggcatatttaggatggtaa |
41893773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 348 - 440
Target Start/End: Complemental strand, 41897788 - 41897696
Alignment:
| Q |
348 |
aaatggtggtactcaactttccatactgtgacagccatgataggtgcaggtgttctcagccttccctatgccatggcatatctaggatggtaa |
440 |
Q |
| |
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|||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
41897788 |
aaatggtggtactcgactttccacacggtgacagccatgataggtgctggtgttctcagcttaccatatgccatggcatatctaggatggtaa |
41897696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 771 - 911
Target Start/End: Complemental strand, 41893675 - 41893533
Alignment:
| Q |
771 |
atgttgttgttatcatggagcctgaccttaaacacaatgtggcaa-tgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatc |
869 |
Q |
| |
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|||||||| |||||||| | || || |||||||||||||||||| |||| ||||| ||||| |||||||| || ||||| || ||||||||| |||||| |
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| T |
41893675 |
atgttgttactatcatggtgtctaacattaaacacaatgtggcaaatgatccagctacatgaatgtgttccgggaactcgtttcgatcgttatattgatc |
41893576 |
T |
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| Q |
870 |
tcggta-acatgcttttggaccaaaacttggaccctggattgt |
911 |
Q |
| |
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| |||| ||||||||||||||||||||||||| | |||||||| |
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| T |
41893575 |
ttggtagacatgcttttggaccaaaacttggagcatggattgt |
41893533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 771 - 911
Target Start/End: Complemental strand, 41897597 - 41897455
Alignment:
| Q |
771 |
atgttgttgttatcatggagcctgaccttaaacacaatgtggcaa-tgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatc |
869 |
Q |
| |
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|||||||| |||||||| | || || |||||||||||||||||| |||| ||||| ||||| |||||||| || ||||| || ||||| ||| |||||| |
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| T |
41897597 |
atgttgttactatcatggtgtctaacattaaacacaatgtggcaaatgatccagctacatgaatgtgttccgggaactcgtttcgatcgatatattgatc |
41897498 |
T |
|
| Q |
870 |
tcggta-acatgcttttggaccaaaacttggaccctggattgt |
911 |
Q |
| |
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| |||| ||||||||||||||||||||||||| | |||||||| |
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| T |
41897497 |
ttggtagacatgcttttggaccaaaacttggagcatggattgt |
41897455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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