View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410-Insertion-6 (Length: 645)
Name: NF5410-Insertion-6
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 7 - 645
Target Start/End: Original strand, 8057666 - 8058304
Alignment:
| Q |
7 |
aggaagaagggtgtgaggaatatttgaaagaaaatttgaggttgagttgggtggttatcgagactcatcaagagcgtgcagggagcttgttttgttctag |
106 |
Q |
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| T |
8057666 |
aggaagaagggtgtgaggaatacttgaaagaaaatttgaggttgagttgggtggttatcgagactcatcaaaagcgtgcagggagcttgttttgttctag |
8057765 |
T |
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| Q |
107 |
tgttaaacctgtttcagttaaacatgtttcagcctctttagagactaaggtagtgtacgagaccatgatgctggggctatctgaggattatacggagatg |
206 |
Q |
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| T |
8057766 |
tgttaaacctgtttcagttgaacatgtttcagcctctttagagactaaggtagtgtacgagaccatgatgccggggctatctgaggattatacggagatg |
8057865 |
T |
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| Q |
207 |
atgaagtgtaaggtgaaggtcgcgtgccatcggaaaggtggagatgatgggttctacgtgaataatcttgagcttcaaatgaaagacatgaatggaaaac |
306 |
Q |
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| T |
8057866 |
gtgaagtgtaaggtgaaggtcacgtgccatcggaaaggtggagatgatgggttctacgtgaataatcttgagcttcaaatgaaagacatgaatggaaaat |
8057965 |
T |
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| Q |
307 |
ctgtgtgggagaaacacggtgccaaagttttgctgaatgttattgaaaatggggagaggaagaagaaagaacgttgatgtttgacaaattccagatcaga |
406 |
Q |
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| T |
8057966 |
ctgtgtgggagaaacacggtaccaaagttttgctgaatgttattgaaaatggggagaggaagaagaaagaacgttgatgtttgacaaattccagatcaga |
8058065 |
T |
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| Q |
407 |
gaaaggctaagcagtggttgcactttttaatctattaagttggtttgtggtttctttaggtcttgtaatggaacatgtctatatatttagattcttgtgg |
506 |
Q |
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| T |
8058066 |
gaaagactaagcagtggttgcactttttaatctattaagttggtttgaggtttctttaggtcttgtaatggaacatgtcaatatatttagattcttgtgg |
8058165 |
T |
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| Q |
507 |
tttttccttatcaagtagtttagtgactaactttcactttaaggtgaatcggtggagaatccggaattcaaactctagtctctacatatatttttgccat |
606 |
Q |
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| T |
8058166 |
ttttttcttatcaagtagtttagtgactagatttcactttaaggtgaattagtgaagaatccggaattcgaactttagtctctacatatatttttgccat |
8058265 |
T |
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| Q |
607 |
gagtttagtagaatatgaccatgttaattagttactttg |
645 |
Q |
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| T |
8058266 |
gggtttagtagaatatgaccatgttaattagttactttg |
8058304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 7500348 - 7500304
Alignment:
| Q |
23 |
ggaatatttgaaagaaaatttgaggttgagttgggtggttatcga |
67 |
Q |
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| T |
7500348 |
ggaatatttgcatgaaaatttgaggttgagttgggtagttatcga |
7500304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 27257796 - 27257839
Alignment:
| Q |
24 |
gaatatttgaaagaaaatttgaggttgagttgggtggttatcga |
67 |
Q |
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| T |
27257796 |
gaatatttgcaagaaaatttgaggttgagttgggttgttatcga |
27257839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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