View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5410_high_15 (Length: 248)
Name: NF5410_high_15
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 27314346 - 27314110
Alignment:
| Q |
1 |
attactgtaaaactcaacactaattcagagcggtagaaatcacgagagatgatagtaaattcaaatgtcatggtggataatgaatattttgacctgaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27314346 |
attactgtaaaactcaacactaattcagagcggtagaaatcacgagagatgatagtaaattcaaatgtcatggtggataatgaatattttgacctgaaac |
27314247 |
T |
|
| Q |
101 |
atttcagattttatttaattatcattaaaatacatagtgatccctagtggggattcggctacaatcggagaaattaagcaatcttctttattctgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27314246 |
atttcagattttatttaattatcattaaaatacatagtgatccctagtggggattcggctacaatcggagaatttaagcaatcttctttattctgacttg |
27314147 |
T |
|
| Q |
201 |
gttattcccacaaccaagtattacttattcatcaagt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27314146 |
gttattcccacaaccaagtattacttattcatcaagt |
27314110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 27323614 - 27323450
Alignment:
| Q |
42 |
acgagagatgatagtaaattcaaatgtcatggtggataatgaatattt--tgacctgaaacatttcagatttta-tttaattatcattaaaatacatagt |
138 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| ||||||| ||| |||||||||||||||||||| ||||||||| || || | ||||| |
|
|
| T |
27323614 |
acgagagatgatagtaaattgaaatgtcacaatggctaataaatattttgtgatctgaaacatttcagattttattttaattat-atgaata-gtatagt |
27323517 |
T |
|
| Q |
139 |
gatccctagtggggattcggctacaatcggagaaattaagcaatcttctttattctgacttggttatt |
206 |
Q |
| |
|
|||||||||| ||||||| | |||||| | ||||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
27323516 |
gatccctagt-gggattcagttacaatggaagaaattaagccatcttctttattctgtctaggttatt |
27323450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 27230345 - 27230244
Alignment:
| Q |
38 |
aatcacgagagatgatagtaaattcaaatgtcatggtggataatgaatattttgacctgaaacatttcagattttatt-taattatcattaaaatacata |
136 |
Q |
| |
|
|||||||||| |||||| || || | ||| || ||||||||||||||||||||| | |||||||| |||||||||| ||||||| ||| |||| |||| |
|
|
| T |
27230345 |
aatcacgagatatgataatatatctatatgacacggtggataatgaatattttgaacagaaacattggagattttattataattattattgaaatgcata |
27230246 |
T |
|
| Q |
137 |
gt |
138 |
Q |
| |
|
|| |
|
|
| T |
27230245 |
gt |
27230244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 27135482 - 27135426
Alignment:
| Q |
139 |
gatccctagtggggattcggctacaatcggagaaattaagcaatcttctttattctg |
195 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
27135482 |
gatccctagttgggatttggttacaatcggagaaattaagtcatctcctttattctg |
27135426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 27302272 - 27302216
Alignment:
| Q |
83 |
aatattttgacctgaaacatttcagatttta-tttaattatcattaaaatacatagt |
138 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
27302272 |
aatattttgaaatgaaatatttcagattttattttaattatcatggaaatacatagt |
27302216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 14889212 - 14889246
Alignment:
| Q |
82 |
gaatattttgacctgaaacatttcagattttattt |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14889212 |
gaatattttgatctgaaacatttcagattttattt |
14889246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University