View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_high_20 (Length: 203)
Name: NF5410_high_20
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 37841034 - 37840865
Alignment:
| Q |
15 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataat |
114 |
Q |
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| T |
37841034 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataat |
37840935 |
T |
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| Q |
115 |
tctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtcag |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37840934 |
tctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtcag |
37840865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 37821469 - 37821298
Alignment:
| Q |
15 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatc---aacaagagtttgat |
111 |
Q |
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|||||||||| | ||||||||||||| || |||||| ||||||| |||||||||| | |||||| |||||||||| |||| ||||||| | |||| |
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| T |
37821469 |
caaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattgtgat |
37821370 |
T |
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| Q |
112 |
aattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtca |
183 |
Q |
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| T |
37821369 |
aattttactgctacaactaattctagtcatttagacaaggttgcaacagaataagaagcacttaccttgtca |
37821298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 37829711 - 37829540
Alignment:
| Q |
15 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatc---aacaagagtttgat |
111 |
Q |
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| T |
37829711 |
caaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattgtgat |
37829612 |
T |
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| Q |
112 |
aattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtca |
183 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
37829611 |
aattttactgctacaactaattctagtcatttagacaaggttgcaacagaataagaagcacttaccttgtca |
37829540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 37835407 - 37835274
Alignment:
| Q |
20 |
gtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctac |
119 |
Q |
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|||||||| |||| |||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||| | || | | ||| |
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| T |
37835407 |
gtccagtgtgtcatgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttac |
37835308 |
T |
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| Q |
120 |
tactacaacaaattctagtcatttagacaaggtt |
153 |
Q |
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| T |
37835307 |
tgctacaactagttctagtcatttggacaaggtt |
37835274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 35025709 - 35025783
Alignment:
| Q |
15 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaagg |
89 |
Q |
| |
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||||||||||||| |||||||||||||| | |||||||||||||| | |||||| |||||||||||| ||||||| |
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| T |
35025709 |
caaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg |
35025783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 37848786 - 37848685
Alignment:
| Q |
19 |
ggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattcta |
118 |
Q |
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|||||||| |||| |||||||||||||||||| |||||| | |||||||| | |||||||||| ||||||| | |||||||| || ||||||||||| |
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| T |
37848786 |
ggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaatagtcaacaagtgtgtgataattcta |
37848687 |
T |
|
| Q |
119 |
ct |
120 |
Q |
| |
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|| |
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|
| T |
37848686 |
ct |
37848685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 36864176 - 36864093
Alignment:
| Q |
15 |
caaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatca |
98 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| || | |||||| ||||||||||||||||||||||| ||||| |
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| T |
36864176 |
caaaggtccagtgagtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
36864093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 12281413 - 12281280
Alignment:
| Q |
20 |
gtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagagcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctac |
119 |
Q |
| |
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|||||||| |||| || ||||||||| ||||||||| || |||||||| ||||||| |||||||||||||| |||||||| |||| | || | | ||| |
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| T |
12281413 |
gtccagtgtgtcatgaatgacaacagtatcaacccattagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaggagtgtaatgaatttac |
12281314 |
T |
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| Q |
120 |
tactacaacaaattctagtcatttagacaaggtt |
153 |
Q |
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| |||| || | ||||| |||||| ||||||||| |
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| T |
12281313 |
tgctacgactagttctaatcatttggacaaggtt |
12281280 |
T |
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