View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_high_3 (Length: 537)
Name: NF5410_high_3
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_high_3 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 36464135 - 36463845
Alignment:
| Q |
10 |
acacagacgcaaataaattgtttaaaaaattaaaattaacttactttccacgatagcacttcatgagtatatattcatagttggtgtgatctatttcaat |
109 |
Q |
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| T |
36464135 |
acacagacgcaaataaattgtttaaaaaattaaaattaacttacttttcacaatagcacttcatgagtatatattcatagttggtgtgatctatttcaat |
36464036 |
T |
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| Q |
110 |
aaaaataaatctgaacagagaaaataaggataagagaacatgaagaaaaaatccaaccattcttctatatcaaaatagatgagaaaggaacaaattgaag |
209 |
Q |
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| T |
36464035 |
aaaaataaatctgaacagagaaaataaggataagagaacatgaagaaaaaatccaaccattcttctatatcaa---------------aacaaattgaag |
36463951 |
T |
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| Q |
210 |
tgaaagaggaaactttgcccaaaagaaggggaaataaatttgtcaaaaagaaatatgtcaaagcatcgccttcttctcaaagcctcactcttaattacct |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
36463950 |
tgaaagaggaaactttacccaaaagaaggggaaataaatttgtcaaaaagaaatatgtcaaagcatcgccatcttatcaaagcctcactct---ttacct |
36463854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 337 - 522
Target Start/End: Complemental strand, 36463554 - 36463369
Alignment:
| Q |
337 |
tggaattaccacatgctttcaaacctctattggcaagcgttcggcaccccggtgaaaacaacaaaatcatgagcaagtaggcagatggttgttttaaatt |
436 |
Q |
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| T |
36463554 |
tggaatgaccacatgctttcaaacctctattggcaagcgttcggcaccctggtgaaaacaacaaaatcatgagcaagtaggcagatgattgttttaaatt |
36463455 |
T |
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| Q |
437 |
aggaagacaaatatagagcatcgtgatatctgcgagagatgatgatgatgattaagattgttttgttatggcaaggaggaattgtt |
522 |
Q |
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| T |
36463454 |
aggaagacaaatatagagcattgtgatatctgcgagagatgatgatgatgattaagattgttttgttgtggcaaggaagaattgtt |
36463369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 35102393 - 35102345
Alignment:
| Q |
389 |
tgaaaacaacaaaatcatgagcaagtaggcagatggttgttttaaatta |
437 |
Q |
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| T |
35102393 |
tgaaaacaacaaaatcatgagcaagcaggcagatggtctttttaaatta |
35102345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 4351329 - 4351267
Alignment:
| Q |
86 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
148 |
Q |
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| T |
4351329 |
atagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
4351267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 29199293 - 29199237
Alignment:
| Q |
169 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaacttt |
225 |
Q |
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| T |
29199293 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaacttt |
29199237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 19768947 - 19768880
Alignment:
| Q |
169 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaactttgcccaaaagaa |
236 |
Q |
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| T |
19768947 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaa |
19768880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 40884626 - 40884583
Alignment:
| Q |
414 |
taggcagatggttgttttaaattaggaagacaaatatagagcat |
457 |
Q |
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| T |
40884626 |
taggcagatggacgttttaaattaggaagacaaatatatagcat |
40884583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 40911276 - 40911319
Alignment:
| Q |
414 |
taggcagatggttgttttaaattaggaagacaaatatagagcat |
457 |
Q |
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| T |
40911276 |
taggcagatggaagttttaaattaggaagacaaatatatagcat |
40911319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 15690 - 15751
Alignment:
| Q |
86 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
148 |
Q |
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| T |
15690 |
atagttggtgtgaacaatttcaataaagataaatctgaagaga-aaaatatgaataagagaac |
15751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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