View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5410_low_1 (Length: 697)
Name: NF5410_low_1
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 11 - 679
Target Start/End: Original strand, 42766640 - 42767297
Alignment:
| Q |
11 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcatttgatacacatcgcaca |
110 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42766640 |
cacacacaaattgaaaccttcagatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcatttgatacacatcgcaga |
42766739 |
T |
|
| Q |
111 |
ccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaatcccccactag |
210 |
Q |
| |
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|| ||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42766740 |
cc--ataaccatcagccacatttgggcgccactgccaaacatctgtgatag---------aagcaacattagaaagtaaagacatacaatcccccactag |
42766828 |
T |
|
| Q |
211 |
atcctcctctcaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttatggc |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42766829 |
atcctcctcccaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttgtggc |
42766928 |
T |
|
| Q |
311 |
taaccgttaatacttacgaatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgaaattaatcttccacttttaaaatttacc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42766929 |
taaccgttaatacttacgaatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgaaattaatcttccacttttaaaatttacc |
42767028 |
T |
|
| Q |
411 |
ggtatgaatcattttctcaattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaattgcat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42767029 |
ggtatgaatcattttctcaattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaaatgcat |
42767128 |
T |
|
| Q |
511 |
aaatggtccatatcaaacagactagttagtcgtttgtcacgaagaaaggaaaaaatactctcattttttggtttattcatttactattttacttcattgt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42767129 |
aaatggtccatatcaaacagactagttagtcgtttgtcacgaagaaagtaaaaaatactctcattttttggtttattcatttactattttacttcattgt |
42767228 |
T |
|
| Q |
611 |
ttacgccactttgatagtaacaaaaaatactcttccatgtgtttaagaagaaatcgagcagagcacagt |
679 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42767229 |
ttacgccactttgatagtaacaaaaaatactcttccatgtgtttaagaagaaatcgagcagagcacagt |
42767297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 9e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 33989132 - 33988851
Alignment:
| Q |
16 |
acaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgc---------atttgatacacatcg |
106 |
Q |
| |
|
|||||||||||||| || | |||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| | |
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| T |
33989132 |
acaaattgaaacctccagaggaacatttttatgccaaactgcgtcaacaacttcatcgcggctatgcatctcctgcctcatgagcatttgatacacacca |
33989033 |
T |
|
| Q |
107 |
cacaccgtataaccatcagccacatttgggcgccactaccagacatc--------tgtgatggtatcctgtaaagcaacattagaaagtaaagacataca |
198 |
Q |
| |
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|| ||||||||||||||| ||||||| | |||||||||||| ||||| | | | ||||||| |||| |||||| ||||| ||| | |||| |
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| T |
33989032 |
caaaccgtataaccatcacccacattagagcgccactaccaaacatccaaacatctttagtaatatcctgcaaagtaacatttgaaagaaaatatgtaca |
33988933 |
T |
|
| Q |
199 |
atcccccactagatcctcctctcaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaa |
280 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |
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|
| T |
33988932 |
ctcccccactagatcctcctcctaagccaacaaccgacgacgccaccccaagcttcccctcaatccccccaacctaaggaaa |
33988851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 15045437 - 15045155
Alignment:
| Q |
11 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgc---------atttgataca |
101 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||||| |||| ||||||||||||||||| || |||||||||||||||| |||| ||||| |
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|
| T |
15045437 |
cacacacaaattgaaaccttcagatgcacatttttataccaaattgcatcaacaacttcattgcaactatgcatctcctgcctcataagcatttaataca |
15045338 |
T |
|
| Q |
102 |
catcgcacaccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaatc |
201 |
Q |
| |
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|| | ||||||||||||| ||||||||| |||||||||| || |||| ||| | ||||||| |||| ||||||| || ||||| ||||| | |
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|
| T |
15045337 |
caccatggaccgtataaccataagccacattagggcgccactgtcaaacatttgtagtagtatcctacaaagtaacattaaaattcaaagatatacactt |
15045238 |
T |
|
| Q |
202 |
ccccactagatcctcctctcaaactaacaaccgacgccgccaccccaa-gcttcacctccatccctccaacctaaggaaaatatt |
285 |
Q |
| |
|
|||||||||||||||| | || | ||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| |
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|
| T |
15045237 |
ccccactagatcctcccc--aagccaacaaccgacgccgccaccccaaagcttctcctccttccccccaacctaaggaaaatatt |
15045155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 33069526 - 33069630
Alignment:
| Q |
175 |
aacattagaaagtaaagacatacaatcccccactagatcctcctctcaaactaacaaccgacgccgcca-ccccaagcttcacctccatccctccaacct |
273 |
Q |
| |
|
|||||||||| | | |||| |||| |||| ||||||||||||||| ||| ||||||| | |||| ||| |||||||| |||| ||| || ||||||||| |
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|
| T |
33069526 |
aacattagaatgcatagacctacactccctcactagatcctcctcccaagctaacaaacaccgcctccagccccaagcatcacatccttcactccaacct |
33069625 |
T |
|
| Q |
274 |
aagga |
278 |
Q |
| |
|
||||| |
|
|
| T |
33069626 |
aagga |
33069630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 28456477 - 28456413
Alignment:
| Q |
243 |
accccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttat |
307 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||| | || || |||||||||||||||| |
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|
| T |
28456477 |
accccaagcttctcctccttcctcccaacctaaggaaaacaattatgctaccgtcttatccttat |
28456413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 38029391 - 38029085
Alignment:
| Q |
11 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcct---------gcatttgataca |
101 |
Q |
| |
|
|||| ||||||||||| ||||||| || ||| |||||| |||| ||| |||| |||||||||| || |||||||||||| |||||||||||| |
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|
| T |
38029391 |
cacacacaaattgaaatcttcaaaggagcatttttatgccaaattgcgtcaataacttcatcgtgattatgcatctcctgcctcataagcatttgataca |
38029292 |
T |
|
| Q |
102 |
catcgcacaccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaatc |
201 |
Q |
| |
|
|| | || || || || | ||| ||||||| || ||||||| ||| | ||| || | || ||||| ||| |||||||||||| ||||| ||||| || |
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|
| T |
38029291 |
caccacagactgtgtatcaatctaccacattaggacgccactgccatatatcagtagtagtttcctgcaaaataacattagaaagcaaagatatacattc |
38029192 |
T |
|
| Q |
202 |
ccccactagatcctcctctcaaactaacaaccgacgccgcca-ccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtctta |
300 |
Q |
| |
|
| || ||| |||||||| ||| | ||| ||| ||||||||| |||||||| || || || ||| ||||||||| || | ||||||||||||||||| |
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|
| T |
38029191 |
cttcattaggtcctcctcccaagccaaccacctacgccgccacccccaagcatctccaccttcctcccaacctaataaacacatttccgccaccgtcttt |
38029092 |
T |
|
| Q |
301 |
tccttat |
307 |
Q |
| |
|
||||||| |
|
|
| T |
38029091 |
tccttat |
38029085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 213 - 304
Target Start/End: Complemental strand, 20417086 - 20416994
Alignment:
| Q |
213 |
cctcctctcaaactaacaaccgacgccgccacccc-aagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatcct |
304 |
Q |
| |
|
|||| |||||| | ||||||||||| ||||||||| ||||||| || | |||| ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
20417086 |
cctcttctcaagccaacaaccgacgtcgccacccccaagcttcctctacttccccccaacctaaggaaaacatttccgccaccgtctcatcct |
20416994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 20417218 - 20417085
Alignment:
| Q |
16 |
acaaattgaaaccttcaaatg-aacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcat--------ttgatacacatcg |
106 |
Q |
| |
|
||||||||||||||||||| | ||||| | |||| |||||||| ||||||||||||||| | ||||||| |||||| | |||||||||| | |
|
|
| T |
20417218 |
acaaattgaaaccttcaaaaggaacatttgtatgccaaactgcgtcaacaacttcatcgtggttatgcatttcctgcctcataagcattgatacacacca |
20417119 |
T |
|
| Q |
107 |
cacaccgtataaccatcagccacatttgggcgcc |
140 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |
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| T |
20417118 |
cggaccgtataaccatcagccacattagggcgcc |
20417085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 33021715 - 33021569
Alignment:
| Q |
162 |
tatcctgtaaagcaacattagaaagtaaagacatacaatcccccactagatcctcctctcaaactaacaaccgacgccgccacccc-aagcttcacctcc |
260 |
Q |
| |
|
||||||| |||| ||||||||||| ||||| |||| | |||| |||| || ||||| || | | |||| |||||||||||||| ||||||| ||||| |
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|
| T |
33021715 |
tatcctgcaaagtaacattagaaaacaaagatgtacatttcccccctaggtcttcctcccacgccagcaactgacgccgccacccccaagcttctcctcc |
33021616 |
T |
|
| Q |
261 |
atccctccaacctaaggaaaatatttccgccaccgtcttatccttat |
307 |
Q |
| |
|
|| ||||||||| ||||| |||| || |||||||||||||||| |
|
|
| T |
33021615 |
tacctcccaacctaaagaaaacatttatgctaccgtcttatccttat |
33021569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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