View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410_low_10 (Length: 333)

Name: NF5410_low_10
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410_low_10
NF5410_low_10
[»] chr6 (1 HSPs)
chr6 (5-326)||(12438296-12438617)
[»] chr2 (1 HSPs)
chr2 (12-318)||(2433376-2433682)
[»] chr5 (5 HSPs)
chr5 (23-317)||(41654455-41654746)
chr5 (23-317)||(41646920-41647211)
chr5 (23-317)||(41620777-41621068)
chr5 (43-289)||(41465666-41465912)
chr5 (188-320)||(41329041-41329173)
[»] chr8 (2 HSPs)
chr8 (23-97)||(5022259-5022333)
chr8 (160-208)||(5022210-5022258)
[»] chr3 (4 HSPs)
chr3 (188-320)||(22971949-22972081)
chr3 (218-320)||(22906296-22906398)
chr3 (188-262)||(22946460-22946534)
chr3 (236-318)||(22986277-22986359)
[»] chr1 (3 HSPs)
chr1 (188-320)||(12609903-12610035)
chr1 (188-320)||(15885832-15885964)
chr1 (188-320)||(12636999-12637131)
[»] scaffold0059 (1 HSPs)
scaffold0059 (188-317)||(62154-62283)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 12438617 - 12438296
Alignment:
Q  5 catgttgttggaagcaagggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctg 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12438617 catgttgttggaagcaagggatatgttgatgaaataaatcttcaagaactaaaatatttaaaagcagtgattaaagaaaccttaagattgcaccctcctg 12438518  T
Q  105 gtcctctactaattccaagagagtgtaaagaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattgg 204  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12438517 gtcctctactaattccaagagagtgtattgaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattgg 12438418  T
Q  205 aagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttatacct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12438417 aagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtctaatttcgagtttatacct 12438318  T
Q  305 tttggtgctggaagaataatgt 326  Q
    |||||||||||||||| |||||    
T  12438317 tttggtgctggaagaagaatgt 12438296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 2433376 - 2433682
Alignment:
Q  12 ttggaagcaagggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctct 111  Q
    |||||| ||| |||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||    
T  2433376 ttggaaacaaaggatatattgatgaaataaattttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctct 2433475  T
Q  112 actaattccaagagagtgtaaagaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagac 211  Q
    |||| | |||||||||||||  |||| ||||| | |||| ||||||| ||||||| | |||||||||||| ||||||||| ||||||||| |||||||||    
T  2433476 actactaccaagagagtgtattgaaacttgtgagattaatggatacacaataccatctggaacacaagtgtttgtgaatggatgggcaataggaagagac 2433575  T
Q  212 ccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtg 311  Q
    | |||||||||||  ||||||||||||||| |||||||||| || || ||| ||| | |||||||||||||||||||||| ||||  |||||||||||||    
T  2433576 caaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgattacaaagggtctaattttgagtacataccttttggtg 2433675  T
Q  312 ctggaag 318  Q
    | |||||    
T  2433676 caggaag 2433682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 41654455 - 41654746
Alignment:
Q  23 ggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctctactaattccaa 122  Q
    ||||||||||||||||   ||||||||||||| |||||| |||||||||| ||||||||||| |||||| |||| ||||||  |||| | ||  |||| |    
T  41654455 ggatatgttgatgaaaaagatcttcaagaactgaaatatctaaaagcagttattaaagaaacattaagagtgcatcctcctaatcctgt-ct--ttccta 41654551  T
Q  123 gagagtgtaaagaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagacccaaagtattg 222  Q
    |||||||||  |||| ||||| | | || ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  41654552 gagagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaagagaccaaaagtattg 41654651  T
Q  223 gaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctggaa 317  Q
    || |||||||||||||||| |||| ||||| ||  | |||  | ||||||||| || |||||||||||| ||||| |||||||||||||| ||||    
T  41654652 gattgaaggagaaaagttttatccagagaggttcttggattcttcaattgatttcagagggtctaattttgagttcataccttttggtgcaggaa 41654746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 41646920 - 41647211
Alignment:
Q  23 ggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctctactaattccaa 122  Q
    ||||||||||||||||   |||||||| |||| |||| | |||||||||| ||||||||||||||||||||||||||| ||  |||| | ||  |||| |    
T  41646920 ggatatgttgatgaaaaagatcttcaaaaactgaaatttctaaaagcagttattaaagaaaccttaagattgcacccttctaatcctat-ct--ttccta 41647016  T
Q  123 gagagtgtaaagaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagacccaaagtattg 222  Q
    |||||||||  |||| ||||| | | || ||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||  ||| |||||    
T  41647017 gagagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaattcatgggcaattggaagagacgaaaaatattg 41647116  T
Q  223 gaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctggaa 317  Q
    || |||||||||||||||| |||| ||||| ||  | |||  ||||||| ||| || |||||||||||| ||||| |||||||||||||| ||||    
T  41647117 gattgaaggagaaaagttttatccagagaggttcttggattctccaattaatttcagagggtctaattttgagttcataccttttggtgcaggaa 41647211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 41621068 - 41620777
Alignment:
Q  23 ggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctctactaattccaa 122  Q
    ||||||||||||||||   ||||| ||||||| |||| | |||||||||| |||||||||||||| ||| |||| ||||||  |||| ||||   || ||    
T  41621068 ggatatgttgatgaaaaagatcttgaagaactgaaatttctaaaagcagttattaaagaaaccttcagactgcatcctcctaatcctttact---tctaa 41620972  T
Q  123 gagagtgtaaagaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagacccaaagtattg 222  Q
    ||||||||   |||| ||||| | | || ||||||| |||||| | ||||||||| ||| | |||||| |||||||||||| |||||||| |||  ||||    
T  41620971 gagagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaacacacgtgttagtgaatacatgggcaattgcaagagaccaaaaaaattg 41620872  T
Q  223 gaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctggaa 317  Q
    || ||| ||||| |||||| |||| ||||| ||  | |||  |||||||||||||||||| || ||||| || ||  ||||||||||||| ||||    
T  41620871 gagtgatggagacaagttttatccagagaggttcttggattctccaattgattacaaaggatccaattttgatttcttaccttttggtgcaggaa 41620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 289
Target Start/End: Original strand, 41465666 - 41465912
Alignment:
Q  43 tcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctctactaattccaagagagtgtaaagaaaattgt 142  Q
    |||||||| ||| |||||| | |||||||| || ||||||||  |||||||||||||||||   ||||| ||  | || ||||| || | ||||| ||||    
T  41465666 tcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccctcctttccctcttcttctccctagagaatgcagagaaacttgt 41465765  T
Q  143 gtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagttta 242  Q
    | | |||| || |||| |||||  |||||||   ||||| | || ||||||||||| ||||||||||| ||||||||||||| ||||   ||||||||||    
T  41465766 gagattaaaggctacacaatacatgccggaaacaaagtgatagtaaatgcatgggcgattggaagagatccaaagtattggagtgaaccggaaaagttta 41465865  T
Q  243 atcctgagagatttattgatcgtccaattgattacaaagggtctaat 289  Q
     ||| ||||||||| | ||  || |||||||||| ||||| ||||||    
T  41465866 ttccggagagatttttggagagttcaattgattataaaggttctaat 41465912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 41329041 - 41329173
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    ||||| ||||| |||||||||||  ||| |||||||  |||||  || |  ||||| |||||||| ||| || || |||||||||||| ||||||  |      
T  41329041 aatgcttgggctattggaagagattcaaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacgg 41329140  T
Q  288 atttcgagtttataccttttggtgctggaagaa 320  Q
    | ||||| || ||||| ||||||||||||||||    
T  41329141 acttcgaattcataccatttggtgctggaagaa 41329173  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 5022333 - 5022259
Alignment:
Q  23 ggatatgttgatgaaatgaatcttcaagaactaaaatatgtaaaagcagtgattaaagaaaccttaagattgcac 97  Q
    ||||||||||||||| || ||||||||||| | |||| | |||||| |||||||||||||||||||||| |||||    
T  5022333 ggatatgttgatgaagtggatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcac 5022259  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 5022258 - 5022210
Alignment:
Q  160 aataccagccggaacacaagtgcttgtgaatgcatgggcaattggaaga 208  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5022258 aataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 5022210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 22972081 - 22971949
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    ||||| |||||||||||||| || ||||| ||||||| |||   ||| |||||| ||||||| |||||||||||| || |  |||||| ||||||  | |    
T  22972081 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaa 22971982  T
Q  288 atttcgagtttataccttttggtgctggaagaa 320  Q
    |||| ||||  || || ||||||||||||||||    
T  22971981 attttgagtacattccatttggtgctggaagaa 22971949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 22906398 - 22906296
Alignment:
Q  218 tattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctggaa 317  Q
    ||||||| ||||| ||| || ||| ||||||| ||||| |||||| || || |||||||||||||     |||| ||||||||||| ||||||||||| |    
T  22906398 tattggattgaagcagagaaattttatcctgaaagattaattgattgttcagttgattacaaaggtgtggattttgagtttataccatttggtgctggga 22906299  T
Q  318 gaa 320  Q
    |||    
T  22906298 gaa 22906296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 22946534 - 22946460
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgat 262  Q
    ||||| |||||||||||||| || ||||| ||||||| |||   ||| |||||| ||||||| ||||||||||||    
T  22946534 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgat 22946460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 22986359 - 22986277
Alignment:
Q  236 aagtttaatcctgagagatttattgatcgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctggaag 318  Q
    |||||| |||||||||| ||||||||| || | ||||||| ||||||  ||||||| ||||  || || ||||||||||||||    
T  22986359 aagttttatcctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag 22986277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 12610035 - 12609903
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    ||||||||||| ||||||||||| |||||||| |||| ||||  ||| |||||| |||| |||||||| || | | |  | ||||| |||||||||  ||    
T  12610035 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaata 12609936  T
Q  288 atttcgagtttataccttttggtgctggaagaa 320  Q
    |||| ||||  || || ||||||||||||||||    
T  12609935 attttgagtacattccctttggtgctggaagaa 12609903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 15885832 - 15885964
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||  ||| | |||| |||| |||||||| |||| | |  | ||||| || ||||||  ||    
T  15885832 aatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaata 15885931  T
Q  288 atttcgagtttataccttttggtgctggaagaa 320  Q
    |||| ||||  || ||||||||| |||||||||    
T  15885932 attttgagtacattccttttggttctggaagaa 15885964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 12637131 - 12636999
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    ||||||||| ||||||| ||||| |||||||| |||| ||||  ||| | |||| |||| |||||||| |||| | |  | ||||| ||||||||   ||    
T  12637131 aatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaata 12637032  T
Q  288 atttcgagtttataccttttggtgctggaagaa 320  Q
    |||| ||||  || ||||||||||| |||||||    
T  12637031 attttgagtacattccttttggtgcaggaagaa 12636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 62283 - 62154
Alignment:
Q  188 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgatcgtccaattgattacaaagggtcta 287  Q
    |||||||||||||| |||||||| |||| ||| ||||  |||  ||| | |||| |||| |||||||| |||| | || | ||||| ||||| |||  ||    
T  62283 aatgcatgggcaatcggaagagatccaaggtactggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaata 62184  T
Q  288 atttcgagtttataccttttggtgctggaa 317  Q
    |||||||||  || ||||||||||||||||    
T  62183 atttcgagtacattccttttggtgctggaa 62154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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