View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_11 (Length: 321)
Name: NF5410_low_11
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 45649199 - 45649498
Alignment:
| Q |
7 |
gcaatgacaaaaattaattttgaatgaattaatttagtaaaatggattatgactaaagaggttaatgtttggattatatnnnnnnnnggggttgaccaat |
106 |
Q |
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| T |
45649199 |
gcaataacaaaaattaattttgaatgaattaatttagtaaaatggattatgactaaagaggttaatgtttggattatataaaaaaaaggggttgaccaat |
45649298 |
T |
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| Q |
107 |
aaattagagggtacaaatcaattgtagaggcaa-caactccaaattccagctagttagaaatgcaaaatcaattctaccatatatagcaaaatcaatttt |
205 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45649299 |
aaattagagggtacaaatcaattgtataggcaaacaactccaaattccagctagttagaaatgcaaaatcaattctaccaaatatagcaaaatcaatttt |
45649398 |
T |
|
| Q |
206 |
acactaaaatgaattaaaagaggtaataaactctaaaattggaccaacctgctacattgttgacaaaacctttgctcaattccattcacaatgactatag |
305 |
Q |
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| T |
45649399 |
acactaaaatgaattgaaaaaagtaataaactctaaaattggaccaacctgctacattgttgacaaaacctttgctcaattccattcacaatgactatag |
45649498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 49979869 - 49979817
Alignment:
| Q |
11 |
tgacaaaaattaattttgaatgaattaatttagtaaaatggattatgactaaa |
63 |
Q |
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| T |
49979869 |
tgacaaaaattaattttgaataaattaattatgtaaaattgattttgactaaa |
49979817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 33560477 - 33560520
Alignment:
| Q |
11 |
tgacaaaaattaattttgaatgaattaatttagtaaaatggatt |
54 |
Q |
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| T |
33560477 |
tgacaaaaaatgattttgaatgaattaatttcgtaaaatggatt |
33560520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 48575561 - 48575520
Alignment:
| Q |
13 |
acaaaaattaattttgaatgaattaatttagtaaaatggatt |
54 |
Q |
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| T |
48575561 |
acaaaaattaattttgaatgaattgattttgtaaaattgatt |
48575520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 25608001 - 25607954
Alignment:
| Q |
247 |
gaccaacctgctacattgttgacaaaacctttgctcaattccattcac |
294 |
Q |
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| T |
25608001 |
gaccaacctactacattgttgacaaaacctttgttcaattccattcac |
25607954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 11511029 - 11510968
Alignment:
| Q |
95 |
gggttgaccaataaattagagggtacaaatcaattgtagaggcaacaactccaaattccagct |
157 |
Q |
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||||||| ||||||||| |||| || |||| |||||||||||||| |||||||||||| |||| |
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| T |
11511029 |
gggttgaacaataaatttgaggtta-aaataaattgtagaggcaaaaactccaaattctagct |
11510968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 43031387 - 43031421
Alignment:
| Q |
7 |
gcaatgacaaaaattaattttgaatgaattaattt |
41 |
Q |
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| T |
43031387 |
gcaatgacaaaaattaattttgaatgaattgattt |
43031421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 38822274 - 38822330
Alignment:
| Q |
96 |
ggttgaccaataaattagagggtacaaatcaattgtagaggcaacaactccaaattc |
152 |
Q |
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|||||| ||||||||| |||| || |||||||||||| ||| || |||||||||||| |
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| T |
38822274 |
ggttgaacaataaatttgaggttaaaaatcaattgtaaaggtaaaaactccaaattc |
38822330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 4194008 - 4194060
Alignment:
| Q |
105 |
ataaattagagggtacaaatcaattgtagaggcaacaactccaaattccagct |
157 |
Q |
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|||||||||||| || ||||||||||||||||||| ||| ||||||| |||| |
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| T |
4194008 |
ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagct |
4194060 |
T |
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