View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_12 (Length: 304)
Name: NF5410_low_12
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 40277217 - 40276971
Alignment:
| Q |
13 |
atcatcatccttcaatgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttcctttagaaaagtgctctaaacttggaatt |
112 |
Q |
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| T |
40277217 |
atcatcatccttgaatgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttccattagaaaagtgctctaaacttggaatt |
40277118 |
T |
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| Q |
113 |
cgagttgaaaatgggtcaaattcacatttctcattcagtcttattannnnnnnnngcaattctcgttattcattccatgatggtactccagattgtattt |
212 |
Q |
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| T |
40277117 |
cgagttgaaaatgggtcaaattcacatttctcattcagtcttattatttttttttgcaattctcgatattcattccatgatggtactccagattgtattt |
40277018 |
T |
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| Q |
213 |
tcagattcttcacctcttgtatgagtttttctacctcttgtatgagt |
259 |
Q |
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| T |
40277017 |
tcagattcttcacctcttgtatgagtttttctacctcttgtatgagt |
40276971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 40598386 - 40598499
Alignment:
| Q |
28 |
tgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatggg |
127 |
Q |
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| T |
40598386 |
tgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatgga |
40598485 |
T |
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| Q |
128 |
tcaaattcacattt |
141 |
Q |
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| T |
40598486 |
tcaaattcgcattt |
40598499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 40598576 - 40598618
Alignment:
| Q |
239 |
ttttctacctcttgtatgagtatatctgcttcttttagccact |
281 |
Q |
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| T |
40598576 |
ttttcaacctcttgcatgagtatatctgtttcttttagccact |
40598618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 40310472 - 40310359
Alignment:
| Q |
28 |
tgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatggg |
127 |
Q |
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|||||| |||||| |||||||||||| | | ||| || |||||| | || |||||| ||| ||||||||||||||||||||| || | ||||||| |
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| T |
40310472 |
tgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggc |
40310373 |
T |
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| Q |
128 |
tcaaattcacattt |
141 |
Q |
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| T |
40310372 |
tcaaactcacattt |
40310359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 40333261 - 40333196
Alignment:
| Q |
78 |
tatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttct |
143 |
Q |
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| T |
40333261 |
tatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatggatcaaaattacatttct |
40333196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 40386539 - 40386474
Alignment:
| Q |
78 |
tatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttct |
143 |
Q |
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|||||||| ||| ||||| ||||||||||||||| |||||||||||| ||||| | |||||||| |
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| T |
40386539 |
tatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttct |
40386474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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