View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410_low_13 (Length: 297)

Name: NF5410_low_13
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410_low_13
NF5410_low_13
[»] chr5 (7 HSPs)
chr5 (14-297)||(40277194-40277477)
chr5 (14-240)||(40376396-40376631)
chr5 (14-282)||(40386599-40386876)
chr5 (14-282)||(40333321-40333598)
chr5 (111-282)||(40598208-40598379)
chr5 (181-264)||(40257607-40257690)
chr5 (143-240)||(40325801-40325898)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 40277477 - 40277194
Alignment:
Q  14 acatcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatcttatattcaaggagt 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40277477 acatcatcaaagatcacaagtattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatctaatattcaaggagt 40277378  T
Q  114 cagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccat 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277377 cagcaatttcatcttgcattgctgtgatatttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccat 40277278  T
Q  214 tgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatgcctctaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  40277277 tgctttcaccaatgctgttttaccagatccctgcttaccatacaagccaatcatagaacaatcatcatccttgaatgcctctaa 40277194  T

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Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 40376631 - 40376396
Alignment:
Q  14 acatcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatat 104  Q
    |||||||||||||||||||| || ||| |||||||||||||||| |||||  |||||  |||||||||||| ||||||         |||||||||||||    
T  40376631 acatcatcaaagatcacaagtataggatgatccatattttctattgtggataatatttttcttgctctttcagcttcactgtttctatcaaatcttatat 40376532  T
Q  105 tcaaggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgacttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| || |||||||    
T  40376531 tcaaggagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatatttaaaaacatgacttt 40376432  T
Q  205 ctcacccattgctttcaccaatgctgttttaccaga 240  Q
    |||||||||| || |||||||||  |||||||||||    
T  40376431 ctcacccattactctcaccaatgtagttttaccaga 40376396  T

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Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 40386876 - 40386599
Alignment:
Q  14 acatcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatat 104  Q
    |||||||||||||| ||||| |||||||||||||||| |||||| |||||  |||||  |||||||||| | ||||||         |||||||||||||    
T  40386876 acatcatcaaagataacaagtattggacgatccatatcttctattgtggataatattcttcttgctcttccagcttcactgtttctatcaaatcttatat 40386777  T
Q  105 tcaaggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgacttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | ||||||    
T  40386776 tcaaggagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggacttt 40386677  T
Q  205 ctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatc 282  Q
    ||   ||||| |||||||||| |  |||||||||||  |  || |||| ||||| || |||||| |||||| ||||||    
T  40386676 ctgttccattactttcaccaacgtagttttaccagagtcacgcctaccgtacaatcctatcatacaacaattatcatc 40386599  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 40333598 - 40333321
Alignment:
Q  14 acatcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatat 104  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||||  |||||  |||||||||| | | ||||         || ||||||||||    
T  40333598 acatcatcaaagatcacaagtattggacgatccatatcttctattgtggataatatttttcttgctcttccagtttcactgtttctatctaatcttatat 40333499  T
Q  105 tcaaggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgacttt 204  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | ||||||    
T  40333498 tcaagaagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggacttt 40333399  T
Q  205 ctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatc 282  Q
    ||   ||||| |||||||||| |  |||||||||||  |  || |||| ||||| || |||||| |||||| ||||||    
T  40333398 ctgttccattactttcaccaacgtagttttaccagagtcacgcctaccgtacaatcctatcatacaacaattatcatc 40333321  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 282
Target Start/End: Original strand, 40598208 - 40598379
Alignment:
Q  111 agtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacc 210  Q
    ||||||||||||| |||||||| | | |||||||  || |||  |||||  || |||||||||  ||||||||||| |||| || ||| |||||||||||    
T  40598208 agtcagcaatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatgcttaactttctcacc 40598307  T
Q  211 cattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatc 282  Q
    |||||||||  |||| ||||| |||||||| ||||   |||||||||| ||||||||||| |||| ||||||    
T  40598308 cattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatc 40598379  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 40257607 - 40257690
Alignment:
Q  181 aaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaat 264  Q
    |||||| |||||||||||| |||||||||| | ||||||||||||   |||||||||||| |||| ||| ||||| || |||||    
T  40257607 aaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaat 40257690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 40325898 - 40325801
Alignment:
Q  143 tttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccaga 240  Q
    |||||| ||| || |||| ||| |||||||| ||||| |||||  ||  | |||||| |||||||| ||| ||||||||| |||| ||||||||||||    
T  40325898 tttgggttttgggacacattgataaataaaacttcatcaaaaaacttggagtacttggctttctcagccactgctttcactaatgttgttttaccaga 40325801  T

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