View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5410_low_14 (Length: 278)
Name: NF5410_low_14
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 3322915 - 3322662
Alignment:
| Q |
9 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3322915 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
3322816 |
T |
|
| Q |
109 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3322815 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
3322716 |
T |
|
| Q |
209 |
attggagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaac |
262 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3322715 |
attagagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaac |
3322662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University