View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_15 (Length: 254)
Name: NF5410_low_15
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 29878505 - 29878273
Alignment:
| Q |
13 |
gagtaattagtaagtacaaaggtcaattaaagaggttttaattaatcaaaagacactcacttaaagtctaaatattccaatttgcaagttaagaagcttt |
112 |
Q |
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| T |
29878505 |
gagtaattagtaagtacaaaggtcaattaaagaggttttaattaatcaaaagacactcacttaaagtctaaatattccaatttgcaagttaagaagcttt |
29878406 |
T |
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| Q |
113 |
ccatgtggtctcatgtgtttctctcgggagtctacacctcaccctctttaatttggtggttatatatttttcttaaatatatgatcaaacttatttcata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29878405 |
ccatgtggtctcatgtgtttctctcgggagtctacacctcaccctctttaatttggtggttatatatttttcttaaatatatgatcaaacttatttcata |
29878306 |
T |
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| Q |
213 |
tgatgtaaataataatcgttcgtttcatctcat |
245 |
Q |
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||||||||||||||||| |||||||||| |||| |
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| T |
29878305 |
tgatgtaaataataatcattcgtttcatatcat |
29878273 |
T |
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