View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410_low_16 (Length: 250)

Name: NF5410_low_16
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410_low_16
NF5410_low_16
[»] chr7 (7 HSPs)
chr7 (32-232)||(27314566-27314772)
chr7 (51-112)||(27035253-27035314)
chr7 (144-189)||(31078506-31078551)
chr7 (145-203)||(18442021-18442078)
chr7 (74-112)||(20878367-20878405)
chr7 (67-112)||(2916193-2916238)
chr7 (32-113)||(28761620-28761701)
[»] chr8 (5 HSPs)
chr8 (51-109)||(7504015-7504073)
chr8 (63-109)||(13446436-13446482)
chr8 (51-112)||(41643241-41643302)
chr8 (147-193)||(41643161-41643207)
chr8 (67-112)||(11539079-11539124)
[»] chr2 (4 HSPs)
chr2 (148-210)||(11673493-11673554)
chr2 (149-226)||(982958-983033)
chr2 (144-201)||(6299021-6299078)
chr2 (155-207)||(3827656-3827708)
[»] chr1 (9 HSPs)
chr1 (35-112)||(26515771-26515850)
chr1 (146-210)||(26515680-26515743)
chr1 (148-211)||(14614899-14614962)
chr1 (45-106)||(13017727-13017788)
chr1 (148-210)||(22572102-22572164)
chr1 (148-210)||(27232306-27232368)
chr1 (63-104)||(25942716-25942757)
chr1 (146-210)||(3823779-3823842)
chr1 (45-85)||(45059355-45059395)
[»] chr5 (7 HSPs)
chr5 (148-210)||(36855241-36855303)
chr5 (63-112)||(15521219-15521268)
chr5 (144-190)||(5069126-5069172)
chr5 (148-210)||(10240723-10240786)
chr5 (51-112)||(14570338-14570399)
chr5 (63-112)||(15515880-15515929)
chr5 (68-112)||(14791030-14791074)
[»] chr4 (4 HSPs)
chr4 (148-210)||(36087307-36087369)
chr4 (52-112)||(32007866-32007926)
chr4 (51-112)||(43159543-43159604)
chr4 (146-191)||(50770701-50770746)
[»] chr6 (20 HSPs)
chr6 (63-112)||(10385324-10385373)
chr6 (51-107)||(10121073-10121129)
chr6 (146-210)||(5764176-5764240)
chr6 (146-210)||(5767711-5767775)
chr6 (146-210)||(5771246-5771310)
chr6 (146-210)||(5774781-5774845)
chr6 (146-210)||(5778316-5778380)
chr6 (146-210)||(5781851-5781915)
chr6 (146-210)||(5785386-5785450)
chr6 (146-210)||(5788921-5788985)
chr6 (146-210)||(5792456-5792520)
chr6 (146-210)||(5795991-5796055)
chr6 (146-210)||(5799526-5799590)
chr6 (146-210)||(5803061-5803125)
chr6 (146-210)||(5806596-5806660)
chr6 (146-210)||(5810131-5810195)
chr6 (146-210)||(5813666-5813730)
chr6 (146-210)||(5817201-5817265)
chr6 (163-209)||(26304343-26304389)
chr6 (52-112)||(14944626-14944686)
[»] chr3 (9 HSPs)
chr3 (51-112)||(6056715-6056776)
chr3 (146-210)||(3519312-3519376)
chr3 (45-112)||(3334499-3334566)
chr3 (65-112)||(10793662-10793709)
chr3 (45-112)||(43752183-43752250)
chr3 (51-112)||(3519409-3519470)
chr3 (63-112)||(41355932-41355981)
chr3 (146-210)||(6056618-6056682)
chr3 (57-89)||(51683976-51684008)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 27314566 - 27314772
Alignment:
Q  32 ttgaaaaacatcaaacatcatttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgacttactacnnnnnnnnnnn--- 128  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||                  
T  27314566 ttgaaaaacatcaaacatcatttatagtgtcagacagttaagttgtagttaaatgtataagcaatgtttcaaacatgacttactacaaaaagaaataaaa 27314665  T
Q  129 ---ttaccattactctacgaacaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacatttatattgacggattttg 225  Q
       | |||||||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27314666 aaataaccattaccctacgaacaatgcataattaatagcaaaattgttgtctttcatacttttacctatagaaaaatgacatttatattgacggattttg 27314765  T
Q  226 tccacaa 232  Q
    |||||||    
T  27314766 tccacaa 27314772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 27035314 - 27035253
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27035314 atttatagtgatagacaattaagttgtagttaaatatataagcaatggttcaaacatgactt 27035253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 31078506 - 31078551
Alignment:
Q  144 gaacaatgcataattgataacaaaattgttgtctttcagactttta 189  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31078506 gaacaatgcataattgacaacaaaattgttgtcttccagactttta 31078551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 18442078 - 18442021
Alignment:
Q  145 aacaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatg 203  Q
    |||||||||||||| | |||||||||||||||||||| |||| ||||||| ||||||||    
T  18442078 aacaatgcataatttacaacaaaattgttgtctttcaaacttgtacctat-gaaaaatg 18442021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 20878367 - 20878405
Alignment:
Q  74 ttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  20878367 ttgtagttaaatatatgagcaatggttcaaacatgactt 20878405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 2916193 - 2916238
Alignment:
Q  67 aattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||||||||||| ||| || | |||||||||||||||||    
T  2916193 aattaagttgtagttaaatatatgagaattggttcaaacatgactt 2916238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 28761620 - 28761701
Alignment:
Q  32 ttgaaaaacatcaaacatcatttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactta 113  Q
    |||||||| ||  |||| ||||||||||| || |||| ||| || ||||||||| ||||| ||||| |||||||| ||||||    
T  28761620 ttgaaaaatatttaacaccatttatagtgacaaacaactaaattatagttaaatatataaacaatgcttcaaacacgactta 28761701  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 7504073 - 7504015
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatga 109  Q
    |||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7504073 atttatggtgacagacaattaagttgtagttaaatatatgagcaatggttcaaacatga 7504015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 13446482 - 13446436
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaacatga 109  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  13446482 agacaattaaattgtagttaaatatataagcaatggttcaaacatga 13446436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 41643302 - 41643241
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||||| | ||||| |||||||||||||||| ||| |||||| ||| |||||||||||    
T  41643302 atttatagtggctgacaactaagttgtagttaaatatatgagcaatagtttaaacatgactt 41643241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 41643207 - 41643161
Alignment:
Q  147 caatgcataattgataacaaaattgttgtctttcagacttttaccta 193  Q
    |||||||||||||||| |||||| ||||||||| | |||||||||||    
T  41643207 caatgcataattgatagcaaaatagttgtctttaaaacttttaccta 41643161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 11539079 - 11539124
Alignment:
Q  67 aattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||| ||||||||| ||| |||| |||||||||||||||||    
T  11539079 aattaagttatagttaaatatatgagcattggttcaaacatgactt 11539124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 11673493 - 11673554
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  11673493 aatgcataattgacagcaaaattgatgtctttca-acttttacctatagaaaaatgacattta 11673554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 983033 - 982958
Alignment:
Q  149 atgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacatttatattgacggattttgt 226  Q
    ||||||||||||   ||||||| |||||||||| | ||||||||||||||||||||||||  || |||||||||||||    
T  983033 atgcataattgactgcaaaattattgtctttcataattttacctatagaaaaatgacatt--tagtgacggattttgt 982958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 6299021 - 6299078
Alignment:
Q  144 gaacaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaa 201  Q
    ||||||||||||||||| ||| ||| || ||||||||| ||| |||||||||| ||||    
T  6299021 gaacaatgcataattgacaacgaaaatgatgtctttcatactcttacctataggaaaa 6299078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 3827708 - 3827656
Alignment:
Q  155 aattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacat 207  Q
    |||||| ||||||||||||||||| ||   ||||||||||||| |||||||||    
T  3827708 aattgacaacaaaattgttgtcttacatgattttacctatagacaaatgacat 3827656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 26515850 - 26515771
Alignment:
Q  35 aaaaacatcaaacatcatttatagtgt--cagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||| ||||||||| |||||||| ||  ||||||| ||| |||||||||||| ||||| ||||||||||||||||||||    
T  26515850 aaaaaaatcaaacataatttatagcgtgacagacaactaaattgtagttaaatatataaacaatggttcaaacatgactt 26515771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 26515743 - 26515680
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||||  |||||| ||||||||    
T  26515743 acaatgcataattgacaacaaaattgttgtctttcaaacttctaccta-cgaaaaaggacattta 26515680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 14614962 - 14614899
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacatttat 211  Q
    |||| ||||||||  |||||||||||||||| || ||||||||||| | |||||||||||||||    
T  14614962 aatgaataattgacgacaaaattgttgtcttccatacttttacctacaaaaaaatgacatttat 14614899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 13017727 - 13017788
Alignment:
Q  45 aacatcatttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaaca 106  Q
    |||||| ||||||||| || |||| |||||||||||||||| ||||||||| | ||||||||    
T  13017727 aacatcctttatagtgacatacaactaagttgtagttaaatatataagcaacgattcaaaca 13017788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 22572164 - 22572102
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||||||||| | |  ||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  22572164 aatgcataattaacagtaaaattgatgtcttttagactttaacctacagaaaaatgacattta 22572102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 27232306 - 27232368
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||||||||||| || ||| |||||||||||||| ||||||||||  ||||||  |||||||    
T  27232306 aatgcataattgacaataaagttgttgtctttcagtcttttacctacggaaaaaatacattta 27232368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 25942716 - 25942757
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaa 104  Q
    |||||| ||||| |||||||||| ||||||||||||||||||    
T  25942716 agacaactaagtggtagttaaatatataagcaatggttcaaa 25942757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 3823842 - 3823779
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| |||| |||| || ||||||||| | |||||||||||||||||  |||||||||||||||    
T  3823842 acaatacatagttgacaataaaattgttatatttcagacttttaccta-cgaaaaatgacattta 3823779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 45059355 - 45059395
Alignment:
Q  45 aacatcatttatagtgtcagacaattaagttgtagttaaat 85  Q
    ||||| ||||||||||  |||||||||||||||||||||||    
T  45059355 aacattatttatagtgatagacaattaagttgtagttaaat 45059395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 36855303 - 36855241
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||  |||||| ||||||||    
T  36855303 aatgcataattgacagcaaaattgctgtctttcagacttttacctacggaaaaaggacattta 36855241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 15521268 - 15521219
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  15521268 agacaattaaattgtagttaaatatataagcaagggttcaaacatgactt 15521219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 5069172 - 5069126
Alignment:
Q  144 gaacaatgcataattgataacaaaattgttgtctttcagacttttac 190  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  5069172 gaacaatgcataattgacaacaaaattgtagtctttcaaacttttac 5069126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 10240723 - 10240786
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatag-aaaaatgacattta 210  Q
    ||||||||||||| | |||||||| |||||||||||||||||  ||| | ||||||||||||||    
T  10240723 aatgcataattgacagcaaaattgctgtctttcagacttttatgtatggaaaaaatgacattta 10240786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 14570399 - 14570338
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||| ||| || ||||||||||||||||| ||| ||| ||||||| ||||||||| ||||    
T  14570399 atttatggtgacaaacaattaagttgtagttcaatatatgagcaatgattcaaacataactt 14570338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 15515929 - 15515880
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||||| || ||||||||| ||||||||| |||| |||||||||||    
T  15515929 agacaattaaattttagttaaatatataagcaagggtttaaacatgactt 15515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 14791074 - 14791030
Alignment:
Q  68 attaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||||    
T  14791074 attaagttttagttaaatatataagcattggttcaaacacgactt 14791030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 36087307 - 36087369
Alignment:
Q  148 aatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    |||||||||| || |||||||||||||||||||||||||| |||||  |||||| ||||||||    
T  36087307 aatgcataatcgacaacaaaattgttgtctttcagactttcacctacggaaaaaggacattta 36087369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 32007866 - 32007926
Alignment:
Q  52 tttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||||  |||||||||| |||||||||||| |||||| ||| |||||||||||||||    
T  32007866 tttatagtgatagacaattaaattgtagttaaatatataagaaatagttcaaacatgactt 32007926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 43159604 - 43159543
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||  || |||||||||||| ||||||| |||||| ||| |||||||||||||||    
T  43159604 atttatagtgataggcaattaagttgtggttaaatatataagtaatagttcaaacatgactt 43159543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 50770746 - 50770701
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacc 191  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||    
T  50770746 acaatgcataattgacaacaaaattgatgtctttcaaacttttacc 50770701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 10385324 - 10385373
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  10385324 agacaattaagttgtagttaaatatataaataatggttcaaacatgactt 10385373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 10121073 - 10121129
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacat 107  Q
    |||||| ||| |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  10121073 atttatggtgacagacaattaagttgtagttaaatatatgagcaatgattcaaacat 10121129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5764176 - 5764240
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5764176 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5764240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5767711 - 5767775
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5767711 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5767775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5771246 - 5771310
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5771246 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5774781 - 5774845
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5774781 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5774845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5778316 - 5778380
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5778316 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5778380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5781851 - 5781915
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5781851 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5781915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5785386 - 5785450
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5785386 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5785450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5788921 - 5788985
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5788921 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5788985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5792456 - 5792520
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5792456 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5792520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5795991 - 5796055
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5795991 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5796055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5799526 - 5799590
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5799526 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5799590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5803061 - 5803125
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5803061 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5803125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5806596 - 5806660
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5806596 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5806660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5810131 - 5810195
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5810131 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5810195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5813666 - 5813730
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5813666 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5813730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5817201 - 5817265
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||| | |||||||||||||||||| | |||||||||   ||||||||||||||    
T  5817201 acaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacattta 5817265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 26304389 - 26304343
Alignment:
Q  163 acaaaattgttgtctttcagacttttacctatagaaaaatgacattt 209  Q
    ||||||||||||  ||| ||||||||||||| |||||||||||||||    
T  26304389 acaaaattgttgaattttagacttttacctacagaaaaatgacattt 26304343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 14944686 - 14944626
Alignment:
Q  52 tttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||| |||| |  |||||||||||||||| ||  ||||||||||||||||| ||||    
T  14944686 tttatagtgacagatacctaagttgtagttaaatataagagcaatggttcaaacattactt 14944626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 6056776 - 6056715
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||  |||||||||| |||||||||||| |||||||||| | |||||||||||||    
T  6056776 atttatagtgatagacaattaaattgtagttaaatatataagcaattgctcaaacatgactt 6056715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 3519376 - 3519312
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||||||| |||||||| |||| | || |||||||||||  |||||||||||||||    
T  3519376 acaattcataattgatagcaaaattgctgtcatccaaacttttacctaccgaaaaatgacattta 3519312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 3334566 - 3334499
Alignment:
Q  45 aacatcatttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||||| || ||||||||||| ||||| |||||| ||| | |||||||||| |||| ||||    
T  3334566 aacatcatttataatgacagacaattaaattgtaattaaatatatgaacaatggttcatacatcactt 3334499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 10793662 - 10793709
Alignment:
Q  65 acaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||| ||||||||| ||| ||||||| ||||||||||||||    
T  10793662 acaattaagttttagttaaatatatgagcaatgattcaaacatgactt 10793709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 43752250 - 43752183
Alignment:
Q  45 aacatcatttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||| ||||||||||  ||| |||||| ||||| |||||| ||| | ||||||||||||||||||||    
T  43752250 aacattatttatagtgatagataattaaattgtaattaaatatatgaacaatggttcaaacatgactt 43752183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 3519470 - 3519409
Alignment:
Q  51 atttatagtgtcagacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    ||||||||||  ||||||||||||||||||| ||| ||||| ||||| ||| || |||||||    
T  3519470 atttatagtgatagacaattaagttgtagttcaatatataaacaatgcttctaatatgactt 3519409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 41355981 - 41355932
Alignment:
Q  63 agacaattaagttgtagttaaatgtataagcaatggttcaaacatgactt 112  Q
    |||||||| |||||||||||||| ||| ||||||| ||||||||| ||||    
T  41355981 agacaatttagttgtagttaaatatatgagcaatgattcaaacataactt 41355932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 6056682 - 6056618
Alignment:
Q  146 acaatgcataattgataacaaaattgttgtctttcagacttttacctatagaaaaatgacattta 210  Q
    ||||| ||||||| | || |||||||||||||| || |||||||||||   ||||||||||||||    
T  6056682 acaattcataattaacaataaaattgttgtcttccaaacttttacctacgaaaaaatgacattta 6056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 51684008 - 51683976
Alignment:
Q  57 agtgtcagacaattaagttgtagttaaatgtat 89  Q
    |||| ||||||||||||||||||||||||||||    
T  51684008 agtgacagacaattaagttgtagttaaatgtat 51683976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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