View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_18 (Length: 241)
Name: NF5410_low_18
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_18 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40607100 - 40607318
Alignment:
| Q |
1 |
tggtgaatgatgatgaagagatcaagaaatgagaccagtactaaaaattcaacaaagcaaagtatattcgacaaagacaaaagagtttcaatgtgtatag |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40607100 |
tggtgaatgatgatgaagagatcaagaaaggagaccagtactaaaaattcaacaaagcaaagtatattcgaccaagacaaaagagtttcaatgtctatag |
40607199 |
T |
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| Q |
101 |
atgcgtcgtgacatacatgcaaagccactagccattatactatttttcttctctcaaattttgttaggagaatgttaaaaagtgctttcaaggcactgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40607200 |
atgcgtcgtgacatacatgcaaagccactagccattatactatttttcttctctcaaattttgttaggagaatgttaaaaagtgctttcaaggcattgat |
40607299 |
T |
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| Q |
201 |
atatcaattaaaacaaata |
219 |
Q |
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||||| ||||||||||| |
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| T |
40607300 |
caatcaactaaaacaaata |
40607318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 25197144 - 25197175
Alignment:
| Q |
210 |
aaaacaaatactccctccgtccctaattataa |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25197144 |
aaaacaaatactccctccgtccctaattataa |
25197175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 259165 - 259136
Alignment:
| Q |
212 |
aacaaatactccctccgtccctaattataa |
241 |
Q |
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| T |
259165 |
aacaaatactccctccgtccctaattataa |
259136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 45907239 - 45907268
Alignment:
| Q |
212 |
aacaaatactccctccgtccctaattataa |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45907239 |
aacaaatactccctccgtccctaattataa |
45907268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 7784301 - 7784268
Alignment:
| Q |
208 |
ttaaaacaaatactccctccgtccctaattataa |
241 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
7784301 |
ttaaaaaaaatactccctccgtccctaattataa |
7784268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 45742848 - 45742820
Alignment:
| Q |
213 |
acaaatactccctccgtccctaattataa |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45742848 |
acaaatactccctccgtccctaattataa |
45742820 |
T |
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