View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_4 (Length: 414)
Name: NF5410_low_4
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 38 - 404
Target Start/End: Complemental strand, 36158484 - 36158109
Alignment:
| Q |
38 |
gaaggaatatatgttgtagttatgaatt---------aatatatagtgatagatttttcatcgataaaaaataatagtgattgatataagtctctaattt |
128 |
Q |
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| T |
36158484 |
gaaggaatatatgttgtagttatgaattgatattgaaaatatatagtgatagatttttcatcgataaaaaatagtagtgattgatataagtctctaattt |
36158385 |
T |
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| Q |
129 |
gatatcatttatcttgttaattaactaacccatagtagtgtatccttatcctatatttttataagctatgtggagcttatttgatattgtattctaataa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36158384 |
gatatcatttatcttgttaattaactaacccatagtagtgtatccttatcctatatttttataagctatgtggagcttatttgatattgtattctaataa |
36158285 |
T |
|
| Q |
229 |
ttttctaatactacttcttatggtttttatgcatggtatggttgcagctaaatgatacctcgatcgtaatcgatgcatcaaagtatattgaaaatctaaa |
328 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36158284 |
ttttctaataccacttcttatggtttttatgcatggtatggttgcagctaaatgatacctcgatcgtaatcgatgcatcaaagtatattgaaaatctaaa |
36158185 |
T |
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| Q |
329 |
ggaaaaggtagaaagactgaatgaagaaataacttctgcagaaagttcaagtgtccacaatcccaatttgcctatg |
404 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36158184 |
ggaaaaggtagaaagactgaatgaagaaatagcttctgcagaaagttcaagtgtccacaatcccaatttgcctatg |
36158109 |
T |
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