View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5410_low_5 (Length: 411)

Name: NF5410_low_5
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5410_low_5
NF5410_low_5
[»] chr4 (4 HSPs)
chr4 (1-406)||(2882017-2882422)
chr4 (53-397)||(2902660-2903004)
chr4 (113-351)||(2871839-2872077)
chr4 (356-401)||(52906416-52906461)
[»] chr2 (4 HSPs)
chr2 (124-352)||(44227138-44227366)
chr2 (125-353)||(44214979-44215207)
chr2 (125-351)||(44238272-44238498)
chr2 (356-402)||(17511484-17511530)
[»] chr7 (7 HSPs)
chr7 (126-198)||(39344151-39344223)
chr7 (126-198)||(39552748-39552820)
chr7 (126-198)||(39358727-39358799)
chr7 (355-402)||(5015144-5015191)
chr7 (131-198)||(39332886-39332953)
chr7 (126-159)||(39543564-39543597)
chr7 (126-198)||(39569586-39569658)
[»] chr8 (1 HSPs)
chr8 (128-171)||(4494203-4494246)
[»] chr3 (2 HSPs)
chr3 (355-402)||(2315487-2315534)
chr3 (356-402)||(13806138-13806184)
[»] chr5 (2 HSPs)
chr5 (356-400)||(12498248-12498292)
chr5 (356-400)||(43537567-43537611)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 2882017 - 2882422
Alignment:
Q  1 agcaaaggaaggaagtgatatatatagtgcaagtaatagtctccggtttagcatgagaagttcttctactacaggttggagaaacggtacaatggaggct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2882017 agcaatggaaggaagtgatatatatagtgcaagtaatagtctccggtttagcatgagaagttcttctactacaggttggagaaacggtacaatggaggct 2882116  T
Q  101 tttgcaaagtcttcgcggcgcgaagaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2882117 tttgcaaagtcttcgcggcgcgaagaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggat 2882216  T
Q  201 tgttggcgacatcgcgtggagttgctaatgaggttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2882217 tgttggcgacatcgcgtggagttgctaatgaggttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctga 2882316  T
Q  301 agagggaaatgaaaagtttttgttgaagctcaaggaaagaattgataggtaatgttgttttcattttcacttcaactgaaaaatataagagaatatagat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2882317 agagggaaatgaaaagtttttgttgaagctcaaggaaagaattgataggtaatgttgttttcattttcacttcaactgaaaaatataagagaatatagat 2882416  T
Q  401 cctatg 406  Q
    ||||||    
T  2882417 cctatg 2882422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 53 - 397
Target Start/End: Complemental strand, 2903004 - 2902660
Alignment:
Q  53 atgagaagttcttctactacaggttggagaaacggtacaatggaggcttttgcaaagtcttcgcggcgcgaagaagatgatgatgaagaagctcttaaat 152  Q
    ||||| |||||||||||||||| |||||||||| ||| ||||||||||||| | | ||| || ||||  | || ||| |||||   ||||||||||| ||    
T  2903004 atgagtagttcttctactacagtttggagaaacagtaaaatggaggctttttcgatgtcatcacggcatggaggagaggatga---agaagctcttagat 2902908  T
Q  153 gggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacatcgcgtggagttgctaatgaggttgatataaca---gatct 249  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||  |   |||||    
T  2902907 gggctgcacttgaaaaactcccgacttataaccgtttaaggaaagggttgttggcgacatcgcgtggagttgcaaatgagattgatatattaagtgatct 2902808  T
Q  250 tggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaatgaaaagtttttgttgaagctcaaggaaagaattgatagg 349  Q
    |||||||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  2902807 tggatttcaagaaagacaaaaactattggataggttgatcaatgttgctgaagagggaaatgagaagtttttgttgaagcttaaggaaagaattgatagg 2902708  T
Q  350 taatgttgttttcattttcacttcaactgaaaaatataagagaatata 397  Q
    |||||||||||||||||||||||||||| || || |||||| ||||||    
T  2902707 taatgttgttttcattttcacttcaactaaataacataagataatata 2902660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 351
Target Start/End: Original strand, 2871839 - 2872077
Alignment:
Q  113 tcgcggcgcgaagaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacat 212  Q
    |||||||||||||||||||||||   |||||| || |||||||||||| ||||||||||||||||||| || ||||| | |||||| |||||||| |  |    
T  2871839 tcgcggcgcgaagaagatgatga---agaagccctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttggccagtt 2871935  T
Q  213 cgcgtggagttgctaatgaggtt---gatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaa 309  Q
    | | ||||||||| |||||| ||   ||||||    | |||||| ||||||| | ||||||||| ||| |||||||||| || | |||||||||||  ||    
T  2871936 cacatggagttgccaatgagattattgatatagataaacttggagttcaagaaagacagaaacttttgaataggttgatcaaagctgctgaagaggataa 2872035  T
Q  310 tgaaaagtttttgttgaagctcaaggaaagaattgataggta 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  2872036 tgaaaagtttttgttgaagctaaaggaaagaattgataggta 2872077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 52906461 - 52906416
Alignment:
Q  356 tgttttcattttcacttcaactgaaaaatataagagaatatagatc 401  Q
    |||||||||||||||||||||| | ||  |||||||||||||||||    
T  52906461 tgttttcattttcacttcaactaataatcataagagaatatagatc 52906416  T

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Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 124 - 352
Target Start/End: Complemental strand, 44227366 - 44227138
Alignment:
Q  124 agaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacatcgcgtggagtt 223  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||| | || ||||| |||||| |  | || | ||||| |    
T  44227366 agaagaagatgatgaagaagctctcaaatgggctgcacttgaaaagctacctacttataatcgtctaagaaaaggtttgttgacagcttctcatggaggt 44227267  T
Q  224 gctaatgaggttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaatgaaaagtttttgt 323  Q
    ||| |||| |||||| |    |||||||  |||||||| || |||||||| ||||| |||||| |||| |||||||||||||  ||||||| |||| |||    
T  44227266 gctcatgaagttgatgttggtgatcttgcttttcaagaaaagcagaaacttttggagaggttggttaaggttgctgaagaggataatgaaaggtttctgt 44227167  T
Q  324 tgaagctcaaggaaagaattgataggtaa 352  Q
    ||||| ||||||||||| |||||||||||    
T  44227166 tgaaggtcaaggaaagagttgataggtaa 44227138  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 353
Target Start/End: Complemental strand, 44215207 - 44214979
Alignment:
Q  125 gaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacatcgcgtggagttg 224  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||| | || ||||| |||||| |  | || | ||||| ||    
T  44215207 gaagaagatgatgaagaagctctcaaatgggctgcacttgaaaaactacctacttacaatcgtctaagaaaaggtttgttgacagcttctcatggaggtg 44215108  T
Q  225 ctaatgaggttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaatgaaaagtttttgtt 324  Q
    || |||| |||||| |    |||||||  ||| |||| || ||||| || ||||| |||||| |||  |||||||||||||  ||||||  |||| ||||    
T  44215107 ctcatgaagttgatgttggtgatcttgcttttaaagaaaagcagaagcttttggagaggttggttagggttgctgaagaggataatgaagggtttctgtt 44215008  T
Q  325 gaagctcaaggaaagaattgataggtaat 353  Q
    |||| ||||||||||| ||||||||||||    
T  44215007 gaaggtcaaggaaagagttgataggtaat 44214979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 125 - 351
Target Start/End: Complemental strand, 44238498 - 44238272
Alignment:
Q  125 gaagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacatcgcgtggagttg 224  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||| | || ||||| |||||| |  | || | ||| | ||    
T  44238498 gaagaagatgatgaagaagctcttaaatgggctgcccttgaaaaactacctacttacaatcgtctaagaaaagggttgttgacagcttctcatggtggtg 44238399  T
Q  225 ctaatgaggttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaatgaaaagtttttgtt 324  Q
    || |||| |||||| |    |||||||  |||||||| ||||||||||| ||||| |||||| |||| ||||||||||| |  ||||||  |||| ||||    
T  44238398 ctcatgaagttgatgttggtgatcttgcttttcaagataaacagaaacttttggagaggttggttaaggttgctgaagaagataatgaagggtttctgtt 44238299  T
Q  325 gaagctcaaggaaagaattgataggta 351  Q
    |||| | ||||| ||| ||||||||||    
T  44238298 gaaggttaaggagagagttgataggta 44238272  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 17511484 - 17511530
Alignment:
Q  356 tgttttcattttcacttcaactgaaaaatataagagaatatagatcc 402  Q
    |||||||||||||||||||||||| ||| |||| | |||||||||||    
T  17511484 tgttttcattttcacttcaactgataaacataaaataatatagatcc 17511530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 39344151 - 39344223
Alignment:
Q  126 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 198  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| ||||||| | | ||||||||||||||    
T  39344151 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaagg 39344223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 39552820 - 39552748
Alignment:
Q  126 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 198  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| ||||||| | | ||||||||||||||    
T  39552820 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaagg 39552748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 39358727 - 39358799
Alignment:
Q  126 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 198  Q
    |||| |||||||||||| ||||||||||||||||| || | || || ||||||| | | ||||||||||||||    
T  39358727 aagaagatgatgaagaatctcttaaatgggctgcaattcagaagcttcctacttttgaacgtttgaggaaagg 39358799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 5015144 - 5015191
Alignment:
Q  355 ttgttttcattttcacttcaactgaaaaatataagagaatatagatcc 402  Q
    ||||||||||||||||||||||| | ||| |||||||||| |||||||    
T  5015144 ttgttttcattttcacttcaactaataaaaataagagaatgtagatcc 5015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 39332886 - 39332953
Alignment:
Q  131 gatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 198  Q
    |||||||||||||||||||||||||||||| || | |  || ||||||| | | ||||||||||||||    
T  39332886 gatgatgaagaagctcttaaatgggctgcaattcagatccttcctacttttgaacgtttgaggaaagg 39332953  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 39543597 - 39543564
Alignment:
Q  126 aagatgatgatgaagaagctcttaaatgggctgc 159  Q
    |||| |||||||||||||||||||||||||||||    
T  39543597 aagaagatgatgaagaagctcttaaatgggctgc 39543564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 39569658 - 39569586
Alignment:
Q  126 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 198  Q
    |||| |||||||||||||||||||| ||||||||| || | || || ||||||| |   ||||||||||||||    
T  39569658 aagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttttgcgcgtttgaggaaagg 39569586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 4494203 - 4494246
Alignment:
Q  128 gatgatgatgaagaagctcttaaatgggctgcacttgaaaaact 171  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||    
T  4494203 gatgaagatgaagaagctcttaaatgggctgcaattgagaaact 4494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 2315534 - 2315487
Alignment:
Q  355 ttgttttcattttcacttcaactgaaaaatataagagaatatagatcc 402  Q
    |||||||||||||||||||| || | ||| ||||||||||||||||||    
T  2315534 ttgttttcattttcacttcatctaataaacataagagaatatagatcc 2315487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 13806184 - 13806138
Alignment:
Q  356 tgttttcattttcacttcaactgaaaaatataagagaatatagatcc 402  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||    
T  13806184 tgttttcattttcacttcaactaataaacataagagaatattgatcc 13806138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 12498292 - 12498248
Alignment:
Q  356 tgttttcattttcacttcaactgaaaaatataagagaatatagat 400  Q
    ||||||||||||||||| |||| | ||| ||||||||||||||||    
T  12498292 tgttttcattttcacttaaactaataaacataagagaatatagat 12498248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 43537567 - 43537611
Alignment:
Q  356 tgttttcattttcacttcaactgaaaaatataagagaatatagat 400  Q
    |||||||||||||||||||||| | ||| ||| ||||||||||||    
T  43537567 tgttttcattttcacttcaactaataaacataggagaatatagat 43537611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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