View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5410_low_7 (Length: 368)
Name: NF5410_low_7
Description: NF5410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5410_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 45649071 - 45648712
Alignment:
| Q |
1 |
tatgcctgtgttacaataattgaaattgatattgtagataatcacacatgtggcttatttgattttaaattatcactgtgaaatacatcgaaaa-cttta |
99 |
Q |
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| T |
45649071 |
tatgcctgtgttacaataattgaaattgatattgtagataatcacacatgtggcttatttgattttaaattatcactgtgaaatacatcgaaaaacttta |
45648972 |
T |
|
| Q |
100 |
atgtgcctaaattgtgatcacatgtttttgtttcaaaaccttggtcttgggttttgaaagccttgatttgtttgtatcattcattgcttaccctttgcac |
199 |
Q |
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| T |
45648971 |
atgtgcctaaattgtgatcacatgtttttgtttcaaaaccttggtcttgggttttgaaagccttgatttgtttgcatcattcattgcttaccctttgcac |
45648872 |
T |
|
| Q |
200 |
ctattgattattatgcttcttaaatgaagtttttgcttcagtgacgtttctacttaggatgataagcctcaaattagaaactgtatagttatgatatata |
299 |
Q |
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| T |
45648871 |
ctattgattattatgcttcttaaatgaagtttttgcttcagtgacgtttctacttaggatgataagcctcaaattagaaactgtatagttatgatatata |
45648772 |
T |
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| Q |
300 |
ggtctggtgtaatgtttagcttgttattcaggtttcatttgctgtctgaatttgatgatg |
359 |
Q |
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| T |
45648771 |
ggtctggtgtaatgtttagcttgttattcaggtttcatttgctgtctgaatttgatgatg |
45648712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 25608551 - 25608603
Alignment:
| Q |
307 |
tgtaatgtttagcttgttattcaggtttcatttgctgtctgaatttgatgatg |
359 |
Q |
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| T |
25608551 |
tgtaatgtttagcttactattcaggtttcatttgctggctgaatttgatgatg |
25608603 |
T |
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