View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5411-Insertion-5 (Length: 667)

Name: NF5411-Insertion-5
Description: NF5411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5411-Insertion-5
NF5411-Insertion-5
[»] chr7 (4 HSPs)
chr7 (380-519)||(27395667-27395809)
chr7 (215-320)||(27395865-27395970)
chr7 (516-631)||(27395505-27395617)
chr7 (629-658)||(27395467-27395496)
[»] chr5 (1 HSPs)
chr5 (25-140)||(19110616-19110730)
[»] scaffold1610 (1 HSPs)
scaffold1610 (16-89)||(1296-1369)
[»] scaffold1605 (1 HSPs)
scaffold1605 (16-89)||(210-283)
[»] chr3 (1 HSPs)
chr3 (25-140)||(11821128-11821241)
[»] chr6 (1 HSPs)
chr6 (36-138)||(2335384-2335486)
[»] chr2 (1 HSPs)
chr2 (72-140)||(36246308-36246376)
[»] chr8 (1 HSPs)
chr8 (379-421)||(109230-109272)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 7e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 380 - 519
Target Start/End: Complemental strand, 27395809 - 27395667
Alignment:
Q  380 ttagtttaatattaagattttgcttggtataagatattaaaattaaaaaataatagtatttaattacaactgatcagacttttaaaccttgatttcagaa 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27395809 ttagtttaatattaagattttgcttggtataagatattaaaattaaaatataatagtatttaattacaactggtcagacttttaaaccttgatttcagaa 27395710  T
Q  480 tat---accatgaagtggagggaataactctccaactcatggt 519  Q
    |||   |||||||| ||||||||||||||||||||||| ||||    
T  27395709 tataccaccatgaaatggagggaataactctccaactcttggt 27395667  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 27395970 - 27395865
Alignment:
Q  215 atgcttaatctttatattaagtatatgctaatttttactattgggtacttaaagataaactcagatttatgttactgggttgctagaagggaaaaaatat 314  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27395970 atgcttaatctttatattaaatatatgctaatttttactattgggtacttaaagataaactcagatttatgttactgggttgctagaagggaaaaaatat 27395871  T
Q  315 tttaaa 320  Q
    ||||||    
T  27395870 tttaaa 27395865  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 516 - 631
Target Start/End: Complemental strand, 27395617 - 27395505
Alignment:
Q  516 tggtgctgctgtgttttcaattgaggtaagttactctagttt-gacatcatgaaggagaatgaatacattggaagatcccagctctagagcaaaactatg 614  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||    ||||||||||||||||| |||||||||||||||||    
T  27395617 tggtgctgctgtgttttcaattaaggtaagctactctagttttgacatcatgaaggaggat----acattggaagatcccaggtctagagcaaaactatg 27395522  T
Q  615 taaaacatcattctcaa 631  Q
    |||||||||||||||||    
T  27395521 taaaacatcattctcaa 27395505  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 658
Target Start/End: Complemental strand, 27395496 - 27395467
Alignment:
Q  629 caatatattgttagaaacttgctcttcaag 658  Q
    ||||||||||||||||||||||||||||||    
T  27395496 caatatattgttagaaacttgctcttcaag 27395467  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 19110616 - 19110730
Alignment:
Q  25 cctcccggtctcatctcatccaccgtagcctcttgttgaattgacaaagagaaaagtctcggatactttaccatgaacggtatttcccctctccacccca 124  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||| || || ||||| ||||| || | |||||| |||  | |||| | |||  |||    
T  19110616 cctcccggtctcatatcatccaccgtagcctcttgttggtttgacaacgaaaagagtctaggatatttaagcatgaatggt-gtaccccccgccaagcca 19110714  T
Q  125 ccttccaaaaactagt 140  Q
    ||||||||||||||||    
T  19110715 ccttccaaaaactagt 19110730  T

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Target: scaffold1610 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1610
Description:

Target: scaffold1610; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 1296 - 1369
Alignment:
Q  16 ctccaacaccctcccggtctcatctcatccaccgtagcctcttgttgaattgacaaagagaaaagtctcggata 89  Q
    ||||||| ||||||||||| ||||||||| || || ||||||| |||||| ||||| |||||||| ||||||||    
T  1296 ctccaactccctcccggtcgcatctcatctactgttgcctctttttgaatagacaaggagaaaagcctcggata 1369  T

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Target: scaffold1605 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1605
Description:

Target: scaffold1605; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 283 - 210
Alignment:
Q  16 ctccaacaccctcccggtctcatctcatccaccgtagcctcttgttgaattgacaaagagaaaagtctcggata 89  Q
    ||||||| ||||||||||| ||||||||| || || ||||||| |||||| ||||| |||||||| ||||||||    
T  283 ctccaactccctcccggtcgcatctcatctactgttgcctctttttgaatagacaaggagaaaagcctcggata 210  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 11821241 - 11821128
Alignment:
Q  25 cctcccggtctcatctcatccaccgtagcctcttgttgaattgacaaagagaaaagtctcggatactttaccatgaacggtatttcccctctccacccca 124  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||| |||   ||||| ||||| || | |||||||||| |  |||||  |||  |||    
T  11821241 cctcccggtctcatatcatccaccgtagcctcttgttggtttgacaaggag-cgagtctaggatatttgagcatgaacggtgtaccccct-gccaagcca 11821144  T
Q  125 ccttccaaaaactagt 140  Q
    ||||||||||||||||    
T  11821143 ccttccaaaaactagt 11821128  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 2335384 - 2335486
Alignment:
Q  36 catctcatccaccgtagcctcttgttgaattgacaaagagaaaagtctcggatactttaccatgaacggtatttcccctctccaccccaccttccaaaaa 135  Q
    |||||||||||||||  ||||||||||| |  ||| ||  |||||||||||||| ||    ||||||||||  |||||| ||||| ||||||||||||||    
T  2335384 catctcatccaccgttacctcttgttgattgaacatagcaaaaagtctcggatatttatgtatgaacggtacctcccctttccacaccaccttccaaaaa 2335483  T
Q  136 cta 138  Q
    |||    
T  2335484 cta 2335486  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 36246376 - 36246308
Alignment:
Q  72 agagaaaagtctcggatactttaccatgaacggtatttcccctctccaccccaccttccaaaaactagt 140  Q
    |||||| ||||| |||||||||||||| ||||  | ||||| ||||||| ||||||||||||| |||||    
T  36246376 agagaagagtcttggatactttaccataaacgcgacttcccttctccacgccaccttccaaaatctagt 36246308  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 109230 - 109272
Alignment:
Q  379 tttagtttaatattaagattttgcttggtataagatattaaaa 421  Q
    |||||||| ||||| | ||||||||||||||||||||||||||    
T  109230 tttagtttgatatttatattttgcttggtataagatattaaaa 109272  T

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