View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5411_high_2 (Length: 548)
Name: NF5411_high_2
Description: NF5411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5411_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 54 - 530
Target Start/End: Original strand, 28818507 - 28818981
Alignment:
| Q |
54 |
taaaaaatttctttttatcaaatctaaaagggttaaccgatgtcgttgtaaattagttttaccttaacatccaataaaaactcactatttcttacaatta |
153 |
Q |
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| T |
28818507 |
taaaaaatttctttttctcaaatctaaaagggttaaacgatgtcgttgtaaattagttttaccttaacatccaataaaaactcactatttcttaaaatta |
28818606 |
T |
|
| Q |
154 |
atttcaaa-tacactaataaaaagtgaaatgatgcagnnnnnnntagagatttattgaatatcattgtaatatagtgtatttactttataataaattttc |
252 |
Q |
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| T |
28818607 |
atttcaaaatacacttattaaaa-tgaaatgatgcagaaaaaaatagagatttattgaatatcattgtaatatagtgtatttactttataataaattttc |
28818705 |
T |
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| Q |
253 |
ataagaaagtggaaagtagtagtacctcaaaatctaatatgtttcgggtgtcaaaatgtgattgcatgctgtccttgtacgtcaacttcgtggcagatgt |
352 |
Q |
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| T |
28818706 |
ataagaaagtggaaagta---gtacctcagaatctaatatgtttcgggtgtcaaaatgtgattgcatgctgtccttgtacgtcaacttcgtggcagatgt |
28818802 |
T |
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| Q |
353 |
tggtgttcctgtctactgcatccttttcacatgcctattacannnnnnnnnnnnnnnnnnnnatcctcaaattgtatgatctacaaggaatattctatgc |
452 |
Q |
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| T |
28818803 |
tggtgttcctgtctactgcatccttttcacatgcctaataca--ttttttttcttcttttttatccacaaattgtatggtctacaaggaatattctatgc |
28818900 |
T |
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| Q |
453 |
ttttcaatttcacaatgatgaataata-ttannnnnnnnatgatgaataata--atatatatacatggtttcccttgttcc |
530 |
Q |
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| T |
28818901 |
ttttcaatttcacaatgatgaataatattttctttttttatgatgaataataatatatatatacatggtttcccttgttcc |
28818981 |
T |
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