View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5411_high_5 (Length: 254)
Name: NF5411_high_5
Description: NF5411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5411_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 44314889 - 44315128
Alignment:
| Q |
2 |
gtactttctagtattatcgagctatgaagcactgacattgaacaccattgacgcattgacattgataataaattaagaaaatataaataatttaatttaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44314889 |
gtactttctagtattatcgagctatgaagcactgacattgaacaccattgacgcattgacattgataataagttaagaaaatataaataatttaatttaa |
44314988 |
T |
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| Q |
102 |
tatcatgtgttagtttcatgtcattgtcgaacactcacaatgtcagacactggacacaccttcaacctaaggtgtcggggctacatactgttcaagtgaa |
201 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44314989 |
tatcatttgttagtttcatgtcattgttgaacactcacaatgtcagacactggacacaccttcaacctaaggtgtcggggctacatacttttcaagtgaa |
44315088 |
T |
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| Q |
202 |
ccaatataatctcaaacttagggtcacggtatttgttttt |
241 |
Q |
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| T |
44315089 |
ccaatataatctcaaacttatggtcacgatatttgttttt |
44315128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 20232982 - 20233222
Alignment:
| Q |
2 |
gtactttctagtattatcgagctatgaagcactgacattgaacaccattgacgcattgacattgataataaattaagaaaatataaat-aatttaattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20232982 |
gtactttctagtattatcgagctatgaagcactgacattgaacaccattgacgcattgacattgataataagttaagaaaatataaattaatttaattta |
20233081 |
T |
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| Q |
101 |
atatcatgtgttagtttcatgtcattgtcgaacactcacaatgtcagacactggacacaccttcaacctaaggtgtcggggctacatactgttcaagtga |
200 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20233082 |
atatcatttgttagtttcatgtcattgttgaacactcacaatgtcagacactggacacaccttcaacctaaggtgtcggggctacatacttttcaagtga |
20233181 |
T |
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| Q |
201 |
accaatataatctcaaacttagggtcacggtatttgttttt |
241 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
20233182 |
accaatataatctcaaacttatggtcacgatatttgttttt |
20233222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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