View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5412-Insertion-1 (Length: 1100)
Name: NF5412-Insertion-1
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5412-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 276 - 776
Target Start/End: Complemental strand, 44096371 - 44095871
Alignment:
| Q |
276 |
gtggaataatggcctcaatataattattatataacaactttggtaaatactatttcctcctcaattttaatttcaaattactattggatacgacgtgtac |
375 |
Q |
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| T |
44096371 |
gtggaataatggcctcaatataattattatataacaactttcgtaaatactatttcctcctcaattttaatttcaaattactattggatacgacgtgtac |
44096272 |
T |
|
| Q |
376 |
ctagatttccaaaggaacataagtaccatgacttataaagagccaaaggtttagggaatattaggtgtgtaaattgggaagttacaaagctcgattggga |
475 |
Q |
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| T |
44096271 |
ctagacttccaaaggaacataagtaccatgacttataaagagccaaaggtttagggaatattagttgtgtaaattgggaagttacaaagctcgattggga |
44096172 |
T |
|
| Q |
476 |
agatcctaacaagattcccataatagcttagtttgnnnnnnngtaaatcttgtccattttgtgagagaagattaattagtggaagaaactatacgtacga |
575 |
Q |
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| T |
44096171 |
agatcctaacaagattcccataatagcttagtttgaaaaaaagtaaatcttgtccattttgtgagagaagattaattagtggaagaaactatacgtacga |
44096072 |
T |
|
| Q |
576 |
tcgtaatcaactagagtgggagccaacgtttgtgtcataacattaagccactatccaatccaattgttattaatttagttgattaatgtctctaaaagtg |
675 |
Q |
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| T |
44096071 |
tcgtaatcaactagagtgggagccaacgtttgtgtcataacattaagccactatccaatccaattgttattaatttagttgattaatgtctctaaaagtg |
44095972 |
T |
|
| Q |
676 |
atatgtcaaatagaaagaacaacgcaaagaccattattaaaattgttttattgcatccgtcatttccaaacttttgaaaccttacgtggtacgaaatttt |
775 |
Q |
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| T |
44095971 |
atatgtcaaatagaaagaacaacgcaaagaccattattaaaattgttttattgcatccgtcatttcctaccttttgaaaccttacgtggtgcgaaatttt |
44095872 |
T |
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| Q |
776 |
c |
776 |
Q |
| |
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| T |
44095871 |
c |
44095871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 44096639 - 44096405
Alignment:
| Q |
8 |
ccttattgggggagtaaggagtgtgttagtgtgtccataaccatgtagctatgtgacactcacctaatataatcaggttttggtttagatgaaaaaagca |
107 |
Q |
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| T |
44096639 |
ccttattgggggagtaaggagtgtgttagtgtgtccataaccatgtagctatgtgacactcacctaatataatcaggttttggtttagatgaaaaaagca |
44096540 |
T |
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| Q |
108 |
aaattgaatcataatcaaaaccctaaagcttcacgagtcatatcatgtgtgttaggaggactataatgtggttgagctgcaaatttaagctacatatata |
207 |
Q |
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| T |
44096539 |
aaattgaatcataatcaaaaccctaaagcttcacgagtcatatcatgtgtgttaggaggactataatgtggttgagctgcaaatttaagctacatatata |
44096440 |
T |
|
| Q |
208 |
tggtttagctaattaatcagtgcaagatgacttgg |
242 |
Q |
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| T |
44096439 |
tggtttagctaattaatcagtgcaagatgacttgg |
44096405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 840 - 967
Target Start/End: Complemental strand, 44095807 - 44095679
Alignment:
| Q |
840 |
gtagggcatatattttctttgaataattttgataacttatccaatttctattacgtgagaaaattcaaaagtattatttacaaacttatttcactccact |
939 |
Q |
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| T |
44095807 |
gtagggcatagattttctttgaataattttgataacttatccaatttctattacgtgagaaaattcaaaagtattatttacaaacttatttcactccact |
44095708 |
T |
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| Q |
940 |
ttataaatttactcac-ttgttctagaaa |
967 |
Q |
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| T |
44095707 |
tcataaatttactcactttgttctagaaa |
44095679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 519 - 673
Target Start/End: Original strand, 44083717 - 44083866
Alignment:
| Q |
519 |
taaatcttgtccattttgtgagagaagattaattagtggaagaaactatacgtacgatcgtaatcaactagagtgggagccaacgtttgtgtcataacat |
618 |
Q |
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|||||||| ||||||||| |||| ||||||| |||||| ||| || ||| |||||| ||||||| ||||||||||||||||||||| | | | ||| |
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| T |
44083717 |
taaatcttatccattttgagagaaaagatta----gtggaacaaattacacgcacgatcaaaatcaacaagagtgggagccaacgtttgtatgaaagcat |
44083812 |
T |
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| Q |
619 |
taagccactatccaatccaattgttattaatttagttgattaatgtctctaaaag |
673 |
Q |
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| T |
44083813 |
tatgccattatccaat-caattgttattaatttagttgattaatgtctttaaaag |
44083866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 44081617 - 44081684
Alignment:
| Q |
83 |
ggttttggtttagatgaaaaaagcaaaattgaatcataatcaaaaccctaaagcttcacgagtcatatc |
151 |
Q |
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| T |
44081617 |
ggttttggtttagatgaaaaaagcaaaatgatatcacaatc-aaaccctaaagcttcacgagtcatatc |
44081684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 995 - 1052
Target Start/End: Complemental strand, 44095640 - 44095582
Alignment:
| Q |
995 |
aaactatcctttccatttatttttctct-aaaatacc-atacaaattataacttagaaga |
1052 |
Q |
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| T |
44095640 |
aaactatcctttccatttatttttctctaaaaataccaatacaaa-tataacttagaaga |
44095582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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