View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5412-Insertion-5 (Length: 156)
Name: NF5412-Insertion-5
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5412-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 1e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 10886252 - 10886104
Alignment:
| Q |
8 |
ctaaagtgaccaaactgtggcagtcaagtaagagcaaatgctctagtctttgtagaagtgggtctcggtcaaatcctagatcctttatcgctgataacca |
107 |
Q |
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| T |
10886252 |
ctaaagtgaccaaactgtggcagtcaagtaagagcaaatgctctagtctttgtagaagtgggtctcggtcaaatcctagatcctttatcgttgataacca |
10886153 |
T |
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| Q |
108 |
caaagtcaatgtcttgagctgtaatacagttcccaatctttcttgtggt |
156 |
Q |
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| T |
10886152 |
caaagtcaatgtcttgagctgtaatacagttcccaatctttcttgtggt |
10886104 |
T |
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Target: chr8; HSP #2
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 10853453 - 10853305
Alignment:
| Q |
8 |
ctaaagtgaccaaactgtggcagtcaagtaagagcaaatgctctagtctttgtagaagtgggtctcggtcaaatcctagatcctttatcgctgataacca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
10853453 |
ctaaagtgaccaaactgtggcagtcaagtaagagcaaatgctctagtctttgtagaagtgggtctcggtcaaatcctagatcctttatcactgatgaccg |
10853354 |
T |
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| Q |
108 |
caaagtcaatgtcttgagctgtaatacagttcccaatctttcttgtggt |
156 |
Q |
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| T |
10853353 |
caaatacaatgtcttgagctgtaatacagttcccaatctttcttgtggt |
10853305 |
T |
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