View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5412_high_2 (Length: 318)
Name: NF5412_high_2
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5412_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 29632729 - 29632433
Alignment:
| Q |
6 |
atataattacataaacattaaaatnnnnnnncatagcggtcaggctatctacaaacagtgaatccaaacatgcattaagcaaaacacttaagaccacata |
105 |
Q |
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| T |
29632729 |
atataattacataaacattaaaataaaaaaacatggcggtcaggctatctacaaacagtgaatccaaacatgcattaagcaaaacacttaagaccacata |
29632630 |
T |
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| Q |
106 |
aatcaataaaaaagcatctttagcacacaataaaatcaaataaaaatgaagttctaatgcaagcataattaaacagtcttccaatcatacttcatcaatc |
205 |
Q |
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| T |
29632629 |
aatcaataaaaaagcatctttagcacacaataagatcaaataaaaatgaagttctaatgcaagcataattaaacagtcttccaatcatacttcatcaatc |
29632530 |
T |
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| Q |
206 |
ttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatcttaataacagtcacacatcttttgcagattacta |
302 |
Q |
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| T |
29632529 |
ttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatcttaataacagtcacacatcttttgcagattacta |
29632433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 29631360 - 29631263
Alignment:
| Q |
160 |
taatgcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgt |
258 |
Q |
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| T |
29631360 |
taatgcaaacataattaaacagtgttggaatcatacttgatcaatcttcaaatgctcaagcaactt-cagcccttcacaagcctcgaaggcatacatgt |
29631263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 16488450 - 16488410
Alignment:
| Q |
134 |
aataaaatcaaataaaaatgaagttctaatgcaagcataat |
174 |
Q |
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| T |
16488450 |
aataaaatcaaataaaaataaagtttttatgcaagcataat |
16488410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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