View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5412_low_3 (Length: 308)
Name: NF5412_low_3
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5412_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8079343 - 8079638
Alignment:
| Q |
1 |
ttgctctatctggtaaactcctagaactgatctatttcatctccattgttttcagcacatacttggtttattctatcgagtctcataggcataatatagt |
100 |
Q |
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| T |
8079343 |
ttgctctatctggtaaactcctagtactaatctatttcatctccattgttttcagcacatacttggtttattctatcgagtctcataggcataatatagt |
8079442 |
T |
|
| Q |
101 |
tgatgaagccgcgattgtgcagttgtatattatcctcatgcatcaacaaaatttatctcaattttcctcattttagtattggattcttccaaagttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8079443 |
tgatgaagccgcgattgtgcagttgtatattatcctcatgcatcaacaaaatttatctcaattttcctcattttagtattggattcttccaaagttgcat |
8079542 |
T |
|
| Q |
201 |
cagtgacataaacaaattcttttaatgttataggtagccacactataggagattcacgatgtactagctttagacaaagactctacaaccaaactg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
8079543 |
cagtgacataaacaaattcttttaatgttataggtagccacactataggagattcacgatgcaccagctttagacaaagactctacaaccaaactg |
8079638 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 32580740 - 32580683
Alignment:
| Q |
239 |
cacactataggagattcacgatgtactagctttagacaaagactctacaaccaaactg |
296 |
Q |
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|||||||||||| | ||| | || || |||||||| |||||||||||||||||||||| |
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| T |
32580740 |
cacactataggaaagtcaaggtgcacaagctttaggcaaagactctacaaccaaactg |
32580683 |
T |
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