View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5412_low_5 (Length: 255)
Name: NF5412_low_5
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5412_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 44833467 - 44833234
Alignment:
| Q |
9 |
acctgtgtaaagaaaagacaagtaaaaataaggcaaagtaagtatcttgtacataagaatcaacttttgttgactctaaatttgaacnnnnnnnggtgca |
108 |
Q |
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| T |
44833467 |
acctgtgcaaagaaaagacaagtaaacataaggcaaagtaagtatctggtacataagaatcaacttttgttgactctaaatttgaacaaaaaaaggtgca |
44833368 |
T |
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| Q |
109 |
atactttgtccaaaggagtgattgttggcggtaaagagcatggtaaaataacaggaggcggttgtattgcatgagagagcgggaagttgcaggagaggag |
208 |
Q |
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| T |
44833367 |
atactttgtccaaaggagtgattgttggcagtaaagagcatggtaaaataacaggaggcagttgtattgcatgagagagcgggaagttgcaagagaggag |
44833268 |
T |
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| Q |
209 |
gccattcaggtggattaggaatagcacatgttac |
242 |
Q |
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| T |
44833267 |
gccattcaggtggattaggaatagcacaggttac |
44833234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 44894258 - 44894212
Alignment:
| Q |
190 |
ggaagttgcaggagaggaggccattcaggtggattaggaatagcaca |
236 |
Q |
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| T |
44894258 |
ggaagttgcaagagaggaggccattcaggtggattaggaatagcaca |
44894212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 44858547 - 44858415
Alignment:
| Q |
109 |
atactttgtccaaaggagtgattgttggcggtaaagagcatggtaaaataacaggaggcggttgtattgcatgagagagcgggaagttgcaggagaggag |
208 |
Q |
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| T |
44858547 |
atactctgtgcaaaggagtgattgtcggcggtgaaaagcatgttaaaacgacaggaagcattttccttgcacaacacagtaggaagttgcaagagaggag |
44858448 |
T |
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| Q |
209 |
gccattcaggtggattaggaatagcacatgtta |
241 |
Q |
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| T |
44858447 |
gccattcaggtggatgaggaacaggacatgtta |
44858415 |
T |
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