View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5412_low_6 (Length: 242)

Name: NF5412_low_6
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5412_low_6
NF5412_low_6
[»] chr6 (5 HSPs)
chr6 (4-237)||(12938668-12938901)
chr6 (4-237)||(33694807-33695039)
chr6 (45-224)||(28138039-28138217)
chr6 (182-237)||(12466426-12466481)
chr6 (88-143)||(14532051-14532106)
[»] chr4 (11 HSPs)
chr4 (4-237)||(27292972-27293205)
chr4 (4-237)||(4919041-4919273)
chr4 (18-237)||(42976357-42976575)
chr4 (45-112)||(45989609-45989676)
chr4 (45-122)||(20133410-20133487)
chr4 (19-112)||(42069019-42069112)
chr4 (18-122)||(55919359-55919463)
chr4 (45-112)||(47031458-47031525)
chr4 (18-122)||(28679508-28679612)
chr4 (51-122)||(15531216-15531287)
chr4 (175-237)||(24228273-24228335)
[»] chr3 (11 HSPs)
chr3 (4-237)||(50650350-50650583)
chr3 (4-237)||(12938427-12938660)
chr3 (18-237)||(31658792-31659010)
chr3 (55-229)||(29833309-29833483)
chr3 (48-237)||(33216657-33216846)
chr3 (45-122)||(39833230-39833307)
chr3 (18-122)||(5232946-5233050)
chr3 (18-122)||(20104322-20104426)
chr3 (51-122)||(29703541-29703612)
chr3 (51-122)||(36950163-36950234)
chr3 (51-122)||(53282294-53282365)
[»] chr1 (6 HSPs)
chr1 (5-237)||(27286190-27286422)
chr1 (4-237)||(52385772-52386005)
chr1 (45-208)||(39241614-39241773)
chr1 (18-122)||(12981521-12981625)
chr1 (18-122)||(45348240-45348344)
chr1 (46-112)||(45325635-45325701)
[»] chr5 (8 HSPs)
chr5 (4-237)||(30624890-30625123)
chr5 (4-237)||(41413401-41413634)
chr5 (4-237)||(1828438-1828671)
chr5 (4-237)||(40313903-40314136)
chr5 (48-237)||(31482071-31482260)
chr5 (18-122)||(24788296-24788400)
chr5 (55-122)||(39884696-39884763)
chr5 (178-237)||(39884580-39884639)
[»] chr7 (8 HSPs)
chr7 (4-237)||(19436698-19436931)
chr7 (4-237)||(29833903-29834136)
chr7 (18-122)||(45972423-45972527)
chr7 (45-112)||(6442636-6442703)
chr7 (45-111)||(34094118-34094184)
chr7 (94-209)||(29258441-29258556)
chr7 (45-122)||(29243380-29243455)
chr7 (18-122)||(47327942-47328046)
[»] chr2 (11 HSPs)
chr2 (4-237)||(14096282-14096515)
chr2 (18-135)||(18977083-18977200)
chr2 (18-122)||(14810087-14810191)
chr2 (18-122)||(15330735-15330839)
chr2 (18-122)||(37261669-37261773)
chr2 (18-122)||(16429864-16429968)
chr2 (18-122)||(17690604-17690708)
chr2 (18-122)||(37078947-37079051)
chr2 (69-122)||(7089225-7089278)
chr2 (51-122)||(33755075-33755146)
chr2 (176-237)||(18977216-18977277)
[»] chr8 (6 HSPs)
chr8 (48-237)||(13802682-13802871)
chr8 (48-172)||(23613574-23613699)
chr8 (48-114)||(23614272-23614338)
chr8 (18-122)||(531684-531788)
chr8 (45-122)||(30945452-30945527)
chr8 (51-122)||(3879472-3879543)
[»] scaffold0166 (1 HSPs)
scaffold0166 (18-122)||(30679-30783)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 12938901 - 12938668
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12938901 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 12938802  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  12938801 gttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatct 12938702  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||||||||||||||||||||  |||||||    
T  12938701 gattggttgaattaaacgacttcactaaaaaagt 12938668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 33695039 - 33694807
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    ||||||||||||||||||||| || |||||| |||||  |||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||     
T  33695039 gagatgaatgagtgataaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaact 33694940  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||| | |||  |||| |||||| ||  ||| ||||||    
T  33694939 gttaagatcatgaaataaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatct 33694841  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||  | | |||||||||||||||||||||    
T  33694840 gattggtccattcaaacgacttcaccgaaaaagt 33694807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 28138039 - 28138217
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 144  Q
    ||||||||||||||||||| |  |||||||||||| |||||||||||  |||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatg 28138138  T
Q  145 aagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaattaaacgact 224  Q
     || ||||| ||||||||||||||||| || ||||||||||||| ||  |||||||| ||||||| ||||||||||||||    
T  28138139 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 12466481 - 12466426
Alignment:
Q  182 gacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
    ||||||||||  |||||||| |||||||||||||||||||||| ||||||||||||    
T  12466481 gacgtgttatgacttgaaatttgattggttgaattaaacgactgcaccgaaaaagt 12466426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 14532051 - 14532106
Alignment:
Q  88 ccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatat 143  Q
    |||||||||||||||| |||||||| |||| ||||| |||| |||||| |||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatat 14532106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 27293205 - 27292972
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293205 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 27293106  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| |||||||| || |||||||||||    
T  27293105 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatct 27293006  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| |||||||||||||||||||||||||||    
T  27293005 gattggctgaattaaacgacttcaccgaaaaagt 27292972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 4919273 - 4919041
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4919273 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacc 4919174  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
     ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  4919173 attaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 4919074  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| |||||| ||||||||||||||||||||    
T  4919073 gattggctgaatt-aacgacttcaccgaaaaagt 4919041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 42976575 - 42976357
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||| | ||    
T  42976575 ataaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaa 42976476  T
Q  118 ataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaatta 217  Q
    | ||||||||||||||||| || |||| || ||||||||||||||||||||| |  | |||| |||||||| ||  ||||||||||||||||||||||||    
T  42976475 agaaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaatta 42976377  T
Q  218 aacgacttcaccgaaaaagt 237  Q
    ||||||| || |||| ||||    
T  42976376 aacgactgcatcgaagaagt 42976357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 45989609 - 45989676
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 112  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  45989609 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 42069019 - 42069112
Alignment:
Q  19 taaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 112  Q
    ||||||||| | ||||||| ||  | ||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  42069019 taaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 55919359 - 55919463
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||  |||| ||| ||||    
T  55919359 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaa 55919458  T
Q  118 ataaa 122  Q
    |||||    
T  55919459 ataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 47031458 - 47031525
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 112  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||||||| ||||||||    
T  47031458 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 28679612 - 28679508
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||| ||||||||||||||||||| |||  |||| ||||  |||||||| | ||    
T  28679612 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaa 28679513  T
Q  118 ataaa 122  Q
    |||||    
T  28679512 ataaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 24228273 - 24228335
Alignment:
Q  175 aacatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||||||||| || ||||||||||||||||||  | | |||||||||||||||| ||||    
T  24228273 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagt 24228335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 50650350 - 50650583
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650350 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 50650449  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  50650450 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 50650549  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| ||||||||||||||| |||||||||||    
T  50650550 gattggctgaattaaacgactttaccgaaaaagt 50650583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 12938660 - 12938427
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||    
T  12938660 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 12938561  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  12938560 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 12938461  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||  | | |||||||||||||||| ||||    
T  12938460 gattggtccattcaaacgacttcaccgaagaagt 12938427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 31658792 - 31659010
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| | ||    
T  31658792 ataaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaa 31658891  T
Q  118 ataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaatta 217  Q
    | ||||||||||||||||| || |||| || ||||||||||||||| ||||| | || |||| ||| |||| ||  ||||||||||||||||||||||||    
T  31658892 agaaacttgtctatggtgggacttatggagcaagtgatccatattagaatttat-cctacatgtgatgtgtcatctcttgaaatctgattggttgaatta 31658990  T
Q  218 aacgacttcaccgaaaaagt 237  Q
    ||||||| ||||||| ||||    
T  31658991 aacgactgcaccgaagaagt 31659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 29833483 - 29833309
Alignment:
Q  55 atgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtga 154  Q
    ||||| ||| ||||||||| |||| |||||| ||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| || ||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtga 29833384  T
Q  155 tccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcacc 229  Q
    ||||||||| |||||||||  || |||||||||| ||  ||| |||||||||||||| | | |||||||||||||    
T  29833383 tccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcacc 29833309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 33216657 - 33216846
Alignment:
Q  48 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 147  Q
    |||||| ||| ||||| | ||||||| |||| ||||||| |||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| ||    
T  33216657 aaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 33216756  T
Q  148 taagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
     ||||||||||||||| ||||||||   || |  ||||||| ||  ||| |||||||||||| | | | |||||||||||||||| ||||    
T  33216757 caagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagt 33216846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 5233050 - 5232946
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| ||||    
T  5233050 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 5232951  T
Q  118 ataaa 122  Q
    |||||    
T  5232950 ataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 20104426 - 20104322
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    ||||| |||| |||||||||| |  | ||||||| | ||||||||| | ||||||||||||||||| ||| |||  |||||||||| |||||||| ||||    
T  20104426 ataaaaaggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaa 20104327  T
Q  118 ataaa 122  Q
    |||||    
T  20104326 ataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 36950163 - 36950234
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||   | |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  36950163 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 27286422 - 27286190
Alignment:
Q  5 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27286422 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccg 27286323  T
Q  105 ttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctg 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| || ||||||||||||    
T  27286322 ttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctg 27286223  T
Q  205 attggttgaattaaacgacttcaccgaaaaagt 237  Q
    ||||| |||||||||||||||||||||||||||    
T  27286222 attggctgaattaaacgacttcaccgaaaaagt 27286190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 52385772 - 52386005
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52385772 gagatgaatgggtgataaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaacc 52385871  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    || ||||||||||||||||||||||||||||||||||||||||  | ||||||||| ||| ||||||||||||||| ||| |||| || |||||||||||    
T  52385872 gtaaagatcttgaaataaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatct 52385971  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| |||||||||||||||||||||||||||    
T  52385972 gattggctgaattaaacgacttcaccgaaaaagt 52386005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 39241773 - 39241614
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 144  Q
    ||||||||||||||||||| ||||||||||||||||| |||   ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39241773 aagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaacttgtctatggtggaacatatg 39241677  T
Q  145 aagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattg 208  Q
    ||| ||||||| ||||||| |||||||| ||||||||||||||||||  ||| |||||||||||    
T  39241676 aagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattg 39241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 12981625 - 12981521
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||    
T  12981625 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 12981526  T
Q  118 ataaa 122  Q
    |||||    
T  12981525 ataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 45348240 - 45348344
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||    
T  45348240 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45348339  T
Q  118 ataaa 122  Q
    |||||    
T  45348340 ataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 45325635 - 45325701
Alignment:
Q  46 agaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 112  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||  |||||||||||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 30625123 - 30624890
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30625123 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 30625024  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||    
T  30625023 gttaaaattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatct 30624924  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||||||||||||||||||||  |||||||    
T  30624923 gattggttgaattaaacgacttcactaaaaaagt 30624890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 41413401 - 41413634
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||    
T  41413401 gagatgcatgagtgataaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 41413500  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  41413501 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 41413600  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||  | | |||||||||||||||| ||||    
T  41413601 gattggtccattcaaacgacttcaccgaagaagt 41413634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 1828671 - 1828438
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||    
T  1828671 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 1828572  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||| || |||||||||||    
T  1828571 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatct 1828472  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||  | | |||||||||||||||| ||||    
T  1828471 gattggtccattcaaacgacttcaccgaagaagt 1828438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 40314136 - 40313903
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||    
T  40314136 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 40314037  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||| || |||||||||||    
T  40314036 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatct 40313937  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||||  | | |||||||||||||||| ||||    
T  40313936 gattggtccattcaaacgacttcaccgaagaagt 40313903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 31482071 - 31482260
Alignment:
Q  48 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 147  Q
    |||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| ||    
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  148 taagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
     ||||||||||||||| |||||||||  || ||||| |||| ||  ||| |||| ||||||| | | | ||||||||| |||||| ||||    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagt 31482260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 24788296 - 24788400
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||    
T  24788296 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 24788395  T
Q  118 ataaa 122  Q
    |||||    
T  24788396 ataaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 39884763 - 39884696
Alignment:
Q  55 atgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  39884763 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 39884639 - 39884580
Alignment:
Q  178 atctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
    ||||||||||| ||  |||||||||||||||||  | | |||||||||||||||||||||    
T  39884639 atctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagt 39884580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 19436931 - 19436698
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  19436931 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaact 19436832  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| |||||| | || |||||||||||    
T  19436831 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatct 19436732  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| |||||||||||||||||||||||||||    
T  19436731 gattggctgaattaaacgacttcaccgaaaaagt 19436698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 29833903 - 29834136
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||     
T  29833903 gagatgaatgagtgataaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaact 29834002  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| || |||||||||||    
T  29834003 gttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatct 29834102  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| ||||||||||||||| ||| |||||||    
T  29834103 gattggctgaattaaacgactttaccaaaaaagt 29834136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 45972527 - 45972423
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||    
T  45972527 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45972428  T
Q  118 ataaa 122  Q
    |||||    
T  45972427 ataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 6442703 - 6442636
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 112  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||| |||||||||    
T  6442703 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 34094184 - 34094118
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 111  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||||||||||||    
T  34094184 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 29258556 - 29258441
Alignment:
Q  94 aaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttata 192  Q
    ||||||||||||||| |||  ||||||||||||||| | ||||||||| ||| || ||||||||||| ||| ||||||| |||  ||||||||||| ||     
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgt-ccattatctgacgtgtcatc 29258458  T
Q  193 gcttgaaatctgattgg 209  Q
     ||||||||||||||||    
T  29258457 acttgaaatctgattgg 29258441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 47328046 - 47327942
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| ||||    
T  47328046 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 47327947  T
Q  118 ataaa 122  Q
    |||||    
T  47327946 ataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 14096515 - 14096282
Alignment:
Q  4 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 103  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||     
T  14096515 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacg 14096416  T
Q  104 gttaagatcttgaaataaacttgtctatggtggaacatatgaagtaagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||    
T  14096415 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatct 14096316  T
Q  204 gattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||||| |||||||||||||||||||||||||||    
T  14096315 gattggctgaattaaacgacttcaccgaaaaagt 14096282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 18977083 - 18977200
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||| | ||||||||| |||||||||||||||||||||||| ||  ||||||||| ||||||||| ||||    
T  18977083 ataaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaa 18977182  T
Q  118 ataaacttgtctatggtg 135  Q
    ||||||||||| ||||||    
T  18977183 ataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 14810087 - 14810191
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||    
T  14810087 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaa 14810186  T
Q  118 ataaa 122  Q
    |||||    
T  14810187 ataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 15330839 - 15330735
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||    
T  15330839 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 15330740  T
Q  118 ataaa 122  Q
    |||||    
T  15330739 ataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 37261669 - 37261773
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||    
T  37261669 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 37261768  T
Q  118 ataaa 122  Q
    |||||    
T  37261769 ataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 16429968 - 16429864
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||| |||| ||| ||||    
T  16429968 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaa 16429869  T
Q  118 ataaa 122  Q
    |||||    
T  16429868 ataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 17690708 - 17690604
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||    
T  17690708 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 17690609  T
Q  118 ataaa 122  Q
    |||||    
T  17690608 ataaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 37079051 - 37078947
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| ||||    
T  37079051 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 37078952  T
Q  118 ataaa 122  Q
    |||||    
T  37078951 ataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  69 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    ||||||||||||||||||| |||  |||||||||| |||||||| |||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 33755075 - 33755146
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||   | ||||||||||||||| |||||||  |||||||||| |||| ||| |||||||||    
T  33755075 aatcatgtgtagacaatataccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaa 33755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 18977216 - 18977277
Alignment:
Q  176 acatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
    |||| |||||||| ||  ||| |||||||||||| ||||||||||||||||| |||| ||||    
T  18977216 acatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagt 18977277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 13802682 - 13802871
Alignment:
Q  48 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 147  Q
    |||||| ||||||||| ||||||||| ||||  ||||||||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| ||    
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  148 taagtgatccatattaaaatttgtcccaacatctgacgtgttatagcttgaaatctgattggttgaattaaacgacttcaccgaaaaagt 237  Q
     ||||||||||||||| |||||||||  || |||||||||| ||  ||| |||||||||||||| | | ||||||||| |||||||||||    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagt 13802871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  48 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt-gaaataaacttgtctatggtggaacatatgaa 146  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||  ||| ||| || || ||||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  147 gtaagtgatccatattaaaatttgtc 172  Q
    | ||||| ||||||||| ||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 23614338 - 23614272
Alignment:
Q  48 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt 114  Q
    |||||||||||||||||||||| ||||||||  || |||||||||||||||||||||||||||||||    
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatctt 23614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 531788 - 531684
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||  ||||    
T  531788 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaa 531689  T
Q  118 ataaa 122  Q
    |||||    
T  531688 ataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  45 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 3879472 - 3879543
Alignment:
Q  51 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 122  Q
    |||||||||||||   | |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  3879472 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 30679 - 30783
Alignment:
Q  18 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaa 117  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||    
T  30679 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 30778  T
Q  118 ataaa 122  Q
    |||||    
T  30779 ataaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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