View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5412_low_7 (Length: 241)

Name: NF5412_low_7
Description: NF5412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5412_low_7
NF5412_low_7
[»] chr3 (6 HSPs)
chr3 (45-144)||(36804515-36804614)
chr3 (45-144)||(36516617-36516717)
chr3 (192-225)||(36804662-36804695)
chr3 (109-144)||(36538823-36538858)
chr3 (1-31)||(36804461-36804491)
chr3 (192-220)||(36516541-36516569)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 36804515 - 36804614
Alignment:
Q  45 ctccgtcaaagaatgagacgagagatatggcaatgaatcaaagttggttttgagttctaagaatgtggcacttcaacaaaatacacttgagtctagttac 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36804515 ctccgtcaaagaacgagacgagagatatggcaatgaatcaaagttggttttgagttctaagaatgtggcacttcaacaaaatacactcgagtctagttac 36804614  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 36516717 - 36516617
Alignment:
Q  45 ctccgtcaaagaatgagacgagagatatggcaatgaatcaaagttggttttgagttctaaga--atgtggcacttcaacaaaatacacttgagtctagtt 142  Q
    ||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| | |||  |||||||||||||||||||||||||| |||||||||    
T  36516717 ctccgtcaaaggattagacgagagatatg-caatgaatcaaagtttgttttgagttttgagagaatgtggcacttcaacaaaatacacttaagtctagtt 36516619  T
Q  143 ac 144  Q
    ||    
T  36516618 ac 36516617  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 36804662 - 36804695
Alignment:
Q  192 atggtgcaaaatgggtatccaagatgtatgtatc 225  Q
    ||||||||||||||||||||||||||||||||||    
T  36804662 atggtgcaaaatgggtatccaagatgtatgtatc 36804695  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 36538858 - 36538823
Alignment:
Q  109 gtggcacttcaacaaaatacacttgagtctagttac 144  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36538858 gtggcacttcaacaaaatacactcgagtctagttac 36538823  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36804461 - 36804491
Alignment:
Q  1 gtgggaaaaaataggagcattcacagcatgc 31  Q
    |||||||||||||||||||||||||||||||    
T  36804461 gtgggaaaaaataggagcattcacagcatgc 36804491  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 36516569 - 36516541
Alignment:
Q  192 atggtgcaaaatgggtatccaagatgtat 220  Q
    |||||||||||||||||||||||||||||    
T  36516569 atggtgcaaaatgggtatccaagatgtat 36516541  T

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