View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-1 (Length: 885)
Name: NF5413-Insertion-1
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 348 - 868
Target Start/End: Complemental strand, 38324542 - 38324022
Alignment:
| Q |
348 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattnnnnnnnnggcagcaaagaaacttacattgatacagaagaagtgt |
447 |
Q |
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| T |
38324542 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattaaaaaaaaggcagcaaagaaacttacattgatacagaagaagtgt |
38324443 |
T |
|
| Q |
448 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttcttaacacttgtaacaccgatattttaaact |
547 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
38324442 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttatttacacttgtaacaccgatattttaaact |
38324343 |
T |
|
| Q |
548 |
gaaggcgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataagacataccagtctacacaagtttctgatctccgc |
647 |
Q |
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| T |
38324342 |
gaaggtgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataagacataacagtctacacaagtttctgatctccgc |
38324243 |
T |
|
| Q |
648 |
aacagcaatacaccttttctcttaaaaaatcaaaactttaccaaattggatacacattccattgcccgccttatcagtaacctccaaccacatagaagca |
747 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38324242 |
aacagcaatacaccttttctcttaaaaaatcaaaactttaccaaattggatacacattccattgcccgccttatcagtaacctccaaccacagagaagca |
38324143 |
T |
|
| Q |
748 |
acaacacttgtttccaataaacagaacaatcaatttaaagtttttaacaaccgataaaatgaccaactgattacaaaaagttttttaaattttactattc |
847 |
Q |
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| T |
38324142 |
acaacacttgtttccaataaacagaacaatcaatttaaagtttttaacaaccgataaaatgaccaactgattacaaaaagttttttaaattttactattc |
38324043 |
T |
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| Q |
848 |
cggtcaaaccaacgacaacca |
868 |
Q |
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| T |
38324042 |
cggtcaaaccaacgacaacca |
38324022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 38325627 - 38325284
Alignment:
| Q |
6 |
cagcattttcccgtttgctttgagcactgattacattcctgacgaatataaataaaacttttaaacaggtatacgccaaagaaaaatcgttttgaaattg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38325627 |
cagcattttcccgtttgctttgagcactgattacattcctgacgaatataaatacaacttttaaacaggtatacgccaaagaaaaatcattttgaaattg |
38325528 |
T |
|
| Q |
106 |
aatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttggatagaaataaaactcaatca |
205 |
Q |
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| T |
38325527 |
aatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttcgattgaaataaaactcaatca |
38325428 |
T |
|
| Q |
206 |
cataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatttgtatttgttttagtcattgattactttgaagtatattgta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38325427 |
cataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatctgtatttgttttagtcattgattactttgaagtatattgta |
38325328 |
T |
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| Q |
306 |
ttggttaccgtcattgttcttaaacctagccaattagaatttgc |
349 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38325327 |
ttggttacagtcattgttcttaaacctagccaattagaatttgc |
38325284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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