View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-13 (Length: 240)
Name: NF5413-Insertion-13
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-13 |
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| [»] scaffold0710 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0710 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 4758 - 4565
Alignment:
| Q |
47 |
gagaaatgaaaatttcctacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttcc |
146 |
Q |
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| T |
4758 |
gagaaatgaaaatttcctacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttcc |
4659 |
T |
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| Q |
147 |
attagatacaacaatgaaacaagtgtcaaagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattg |
240 |
Q |
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| T |
4658 |
attagatacaacaatgaaacaagtgtcaaagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattg |
4565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 51860799 - 51860606
Alignment:
| Q |
47 |
gagaaatgaaaatttcctacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttcc |
146 |
Q |
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| T |
51860799 |
gagaaatgaaaatttcctacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttcc |
51860700 |
T |
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| Q |
147 |
attagatacaacaatgaaacaagtgtcaaagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattg |
240 |
Q |
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| T |
51860699 |
attagatacaacaatgaaacaagtgtcaaagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattg |
51860606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 51850324 - 51850159
Alignment:
| Q |
75 |
aactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatgaaacaagtgtca |
174 |
Q |
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| T |
51850324 |
aactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagatacaagtgtca |
51850225 |
T |
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| Q |
175 |
aagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattg |
240 |
Q |
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| T |
51850224 |
aagcaagaccaactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaattg |
51850159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 51755936 - 51756057
Alignment:
| Q |
64 |
tacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatga |
163 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| ||| ||||| ||||||| ||||| ||||||||||| || |
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| T |
51755936 |
tacctacagtaaactccatgacaacaaccacagtcatgacagcaaccacaacattctttcccatcactttgaacaatggctccataagatacaacaagga |
51756035 |
T |
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| Q |
164 |
aacaagtgtcaaagctaaacca |
185 |
Q |
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| T |
51756036 |
aacaagtgtcaaaactaaacca |
51756057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 51820786 - 51820610
Alignment:
| Q |
63 |
ctacctactgtaaactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatg |
162 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||| |||||||||||||||| ||| | |
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| T |
51820786 |
ctacctacagtgaactccatgaccacaaccacagtcatgacagcccacatagcatttgatcctatccctttgaacaaaggttccattagatacagcaaag |
51820687 |
T |
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| Q |
163 |
aaacaagtgtcaaagctaaaccaactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaatt |
239 |
Q |
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| T |
51820686 |
atactagtgctaaagcaagaccaactttcagagaatggagtatccttcttggatcatctttgccaactttccaaatt |
51820610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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