View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-14 (Length: 176)
Name: NF5413-Insertion-14
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 7e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 25216415 - 25216583
Alignment:
| Q |
8 |
aatcccttttcaacgttaaacaaattaaatactttggtcattaccggttgtatagttcgtgattatttaaacctctgcatagtgaatgccacactagcca |
107 |
Q |
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| T |
25216415 |
aatcccttttcaacgttaaacaaattaaatactttggtcattaccggttgtatagttcgtgattatttaaacctctgcatagtgaatgccacactagcca |
25216514 |
T |
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| Q |
108 |
atttaagaatacaatctggcttttccatgtctgagatgaaatttcagttatccactccaaatctctgta |
176 |
Q |
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| T |
25216515 |
atttaagaatacaatctggcttttccatgtctgagatgaaatttcagttatccactccaaatctctgta |
25216583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 25280570 - 25280738
Alignment:
| Q |
8 |
aatcccttttcaacgttaaacaaattaaatactttggtcattaccggttgtatagttcgtgattatttaaacctctgcatagtgaatgccacactagcca |
107 |
Q |
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| T |
25280570 |
aatcccttttcaacgttaaacaaattaaatactttggtcattaccggttgtatagttcgtgattatttaaacctctgcatagtgaatgccacactagcca |
25280669 |
T |
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| Q |
108 |
atttaagaatacaatctggcttttccatgtctgagatgaaatttcagttatccactccaaatctctgta |
176 |
Q |
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| T |
25280670 |
atttaagaatacaatctggcttttccatgtctgagatgaaatttcagttatccactccaaatctctgta |
25280738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 25064725 - 25064893
Alignment:
| Q |
8 |
aatcccttttcaacgttaaacaaattaaatactttggtcattaccggttgtatagttcgtgattatttaaacctctgcatagtgaatgccacactagcca |
107 |
Q |
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| T |
25064725 |
aatccctttttgacattaaacaaattaaatagtttggtcattaccggttgtattgttcgtaaaaatcgaaacctctgcatatcgtgtgccacactcgcca |
25064824 |
T |
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| Q |
108 |
atttaagaatacaatctggcttttccatgtctgagatgaaatttcagttatccactccaaatctctgta |
176 |
Q |
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| T |
25064825 |
gtttaacaatagaaactggcttttctaagtctgagttgaaatttcagttatccacgccaagtctttgta |
25064893 |
T |
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