View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413-Insertion-2 (Length: 865)
Name: NF5413-Insertion-2
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-2 |
 | |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Complemental strand, 16005115 - 16004683
Alignment:
| Q |
14 |
accatcaaatcaataagtcttactattaaattaaataaaatatgatgagatttaatgatccggtaaaagaaaatga---acatgtacatgttgtaatact |
110 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||| | | ||||||| | |||||| |||||||||||||| |
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|
| T |
16005115 |
accatcgaatcaata-gtctcgctattaaataaaataaaatatgatgagatttaatgatctactgatagaaaataataaacatgtgcatgttgtaatact |
16005017 |
T |
|
| Q |
111 |
atcttgctcgaaagatattgtaaatattgctactaattttacagtaatgtccgaggtgaaatcatgcgagctaactaggattggaggtggttgtccagat |
210 |
Q |
| |
|
|| |||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16005016 |
attttgctcaaagaatattgtaaatattattactaattttacagtaatgtcggaggtgaaatcatgcgagctaactaggattggaggtggttgtccagat |
16004917 |
T |
|
| Q |
211 |
atatcaaaatgcatgaaaacttgtcttccatgttatgttggcataggtgaaatccattactattgtcgtcatcctggtggtccaatattatacgaaacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16004916 |
atatcaaaatgcatgaaaacttgtcttccatgttatgttggcataggtgaaatccactactattgtcgtcatcctggtggtccaatattatacgaaacat |
16004817 |
T |
|
| Q |
311 |
gtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgcccggggaacacacctcctgctgccgttgcttccaactacaatcaaactcaatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
16004816 |
gtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgccctgggaacacacctcctgccgccgttgcttccaactacaatcaaactcaatt |
16004717 |
T |
|
| Q |
411 |
catgaaatatttgaatgttacagcttaaatatga |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
16004716 |
catgaaatatttgaatgttacagcttaaatatga |
16004683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 633 - 865
Target Start/End: Complemental strand, 16003858 - 16003626
Alignment:
| Q |
633 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttttgttcttgcaaga |
732 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
16003759 |
T |
|
| Q |
733 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16003758 |
tccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
16003659 |
T |
|
| Q |
833 |
attttcctccacaagtcgagtcataccgctatt |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16003658 |
attttcctccacaagtcgagtcataccgctatt |
16003626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 633 - 865
Target Start/End: Complemental strand, 26795241 - 26795006
Alignment:
| Q |
633 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttttgttcttgca |
729 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |
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|
| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgca |
26795142 |
T |
|
| Q |
730 |
agatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggt |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26795141 |
agatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagt |
26795042 |
T |
|
| Q |
830 |
tccattttcctccacaagtcgagtcataccgctatt |
865 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26795041 |
tccgttttcctccacaagtcgagtcataccgctatt |
26795006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 440 - 635
Target Start/End: Complemental strand, 16004601 - 16004408
Alignment:
| Q |
440 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataagaattttcatgtacgcaacataagtacatagcataaaatgtc |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
16004601 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataaaaattttcatgtacacaacataagtacataacataaaatgtc |
16004502 |
T |
|
| Q |
540 |
ttcttctttttcctttcnnnnnnnnnnnnnnntaacatttcttcttaacaaacctttctacaaactgcgcacataagagacggaaagtgtctgcaa |
635 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
16004501 |
ttcttctttttcctttcaaaaaaattaaaaaataacatgtcttcttgacaaacctttctacaaact--gcacataaaagaagaaaagtgtctgcaa |
16004408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 41625532 - 41625584
Alignment:
| Q |
22 |
atcaataagtcttactattaaattaaataaaatatgatgagatttaatgatcc |
74 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
41625532 |
atcaataaatttcactattaaattaaataaaatatgatgagattcattgatcc |
41625584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 633 - 865
Target Start/End: Complemental strand, 40722202 - 40721970
Alignment:
| Q |
633 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttttgttcttgcaaga |
732 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaaga |
40722103 |
T |
|
| Q |
733 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40722102 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttc |
40722003 |
T |
|
| Q |
833 |
attttcctccacaagtcgagtcataccgctatt |
865 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |
|
|
| T |
40722002 |
gttttccacgacaagtcgagtcataccgctatt |
40721970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 24730251 - 24730219
Alignment:
| Q |
40 |
taaattaaataaaatatgatgagatttaatgat |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24730251 |
taaattaaataaaatatgatgagatttaatgat |
24730219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 8e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 633 - 816
Target Start/End: Original strand, 27221880 - 27222063
Alignment:
| Q |
633 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttttgttcttgcaaga |
732 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatatggttctgttcttgcaaga |
27221979 |
T |
|
| Q |
733 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221980 |
tccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
27222063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 143 - 440
Target Start/End: Complemental strand, 48819152 - 48818849
Alignment:
| Q |
143 |
ctaattttacagtaatgtccgaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttccatg |
242 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| || |||| | |||||||||| ||||||||| |||||| |
|
|
| T |
48819152 |
ctaattttacagtaatgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcatccatg |
48819053 |
T |
|
| Q |
243 |
ttatgttggcataggtgaaatccattactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgt |
342 |
Q |
| |
|
|||| ||||||||||| || || | ||||||||||||||| | | | ||||||| |||||||||||||||||||| | ||||||||| |||||||| ||| |
|
|
| T |
48819052 |
ttatattggcataggtcaagtcaactactattgtcgtcatgccgctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgt |
48818953 |
T |
|
| Q |
343 |
caagtgcgcgggtgcccggggaacacacctcctgctgc------cgttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagctt |
436 |
Q |
| |
|
||||| || || || ||||||||||||||||||||||| | |||| ||||||||| | || |||| |||||||||||||||||||||||| ||| |
|
|
| T |
48818952 |
caagttcgtggatgtccggggaacacacctcctgctgctgcctttgctgctgccaactacactgaacctcatttcatgaaatatttgaatgttacaactt |
48818853 |
T |
|
| Q |
437 |
aaat |
440 |
Q |
| |
|
|||| |
|
|
| T |
48818852 |
aaat |
48818849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 817 - 865
Target Start/End: Original strand, 27222822 - 27222870
Alignment:
| Q |
817 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatt |
865 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatt |
27222870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 40285462 - 40285411
Alignment:
| Q |
22 |
atcaataagtcttactattaaattaaataaaatatgatgagatttaatgatc |
73 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
40285462 |
atcaataagtctcactattaaattgaataaaatataacgagatttaatgatc |
40285411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 40210461 - 40210411
Alignment:
| Q |
22 |
atcaataagtcttactattaaattaaataaaatatgatgagatttaatgat |
72 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40210461 |
atcaataagtctcgttattaaattaaatgaaatatgatgagatttaatgat |
40210411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 47872988 - 47873037
Alignment:
| Q |
23 |
tcaataagtcttactattaaattaaataaaatatgatgagatttaatgat |
72 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47872988 |
tcaataaattttactattaaattaaatgaaatatgatgagatttaatgat |
47873037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 8073669 - 8073750
Alignment:
| Q |
37 |
tattaaattaaataaaatatgatgagatttaatgatccggtaaaagaaaatgaacatgtacatgttgtaatactatcttgct |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | || |||||| ||| ||| |||| ||||||||||| ||||| |
|
|
| T |
8073669 |
tattaaattaaatgaaatatgatgagatttaatgattcaatagttgaaaataaacttgtgcatggtgtaatactattttgct |
8073750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 13587638 - 13587688
Alignment:
| Q |
22 |
atcaataagtcttactattaaattaaataaaatatgatgagatttaatgat |
72 |
Q |
| |
|
|||||||| ||| ||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13587638 |
atcaataaatctcactattaaattgaatgaaatatgacgagatttaatgat |
13587688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 21001428 - 21001390
Alignment:
| Q |
36 |
ctattaaattaaataaaatatgatgagatttaatgatcc |
74 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21001428 |
ctattaaattaaatgtaatatgatgagatttaatgatcc |
21001390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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