View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-4 (Length: 650)
Name: NF5413-Insertion-4
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 13143517 - 13144156
Alignment:
| Q |
8 |
gttttaaaatctatacgattctcctttctttctttccatccaatcactacattcatcattctccttttctcccaaactctataacagtctcaacatattc |
107 |
Q |
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| T |
13143517 |
gttttaaaatctatacgattctcctttctttctttccatccaatcactacattcatcattctccttttctcccaaactctataacagtctcaacatattc |
13143616 |
T |
|
| Q |
108 |
cttccacaacattccattcttttatataatcctcgccaactttcaaagattcatcaacatgcccattgatataacacaagtttcatctgactttggcacc |
207 |
Q |
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| T |
13143617 |
cttcaacaacattccattcttttctataatcctcaccaactttcaaagattcatcaacatgcctattgatataacacgagtttcatctgactttggcacc |
13143716 |
T |
|
| Q |
208 |
ttcacttgtaaagtttatgtcgaccagaaccattctttctgtttttcgacgacttcaaacaacattgttgaagaagagtagctagctgcgacattgaata |
307 |
Q |
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| T |
13143717 |
ttcacttataaggtttatgtcgaccagaaccattctttctgtttttcgacgacttcaaacaacattgttgaagaagagtagctagctgcgacattgaata |
13143816 |
T |
|
| Q |
308 |
ctag----gctgaatcctctttagtgcgttgtggcgtgtaacaaaaacgagggagaagagtttgcttccacaatccacctacgtgttcgtgatagggtat |
403 |
Q |
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| T |
13143817 |
ctagctaggttgaatcctctttagtgcgttgtggcgtgtaacaaaaacgagggagaagagtttgcttccacaatccacctatgtgttcgtgatagggtat |
13143916 |
T |
|
| Q |
404 |
taatctaccaattaggcaatgagaactcccgaattacactggctcacccaccacattctcttcaatttccaagaaaggtggtaaacattcgacgtggttt |
503 |
Q |
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| T |
13143917 |
taatctgtcaattaggcaatgagaactcccgaattacactggctcacccaccacattctcttcaatttccaaaaaaagtggtaaacattcgacgtggttt |
13144016 |
T |
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| Q |
504 |
accgattcaagagccaaacgacacattaaagacgctttttgagagacatatgcagattgtcacacctaactttaacaacaaaatggttcacaattggagg |
603 |
Q |
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| T |
13144017 |
accgattcaagagcgaaacgacacattgaagacgctttttgagagacatatgcagattgtcacacctaactttaacaacaaaatggttcacaattggagg |
13144116 |
T |
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| Q |
604 |
gcccataattactcacaggatcaattgttgtttggttcac |
643 |
Q |
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| T |
13144117 |
gcccgtaattactcacaggatcaattgttgtttggttcac |
13144156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 13127610 - 13127455
Alignment:
| Q |
225 |
tgtcgaccagaaccattctttctgtttttcgacgacttcaaacaacattgttgaagaagagtagctagctgcgacattgaatactaggctgaatcctctt |
324 |
Q |
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| T |
13127610 |
tgtcgaccagaaccattctttatgcattttgacaacttcgaacaatatcattgcagaagagtagttggacgtgacattgaatgatgggctaaatccactc |
13127511 |
T |
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| Q |
325 |
tagtgcgttgtggcgtgtaacaaaaacgagggagaagagtttgcttccacaatcca |
380 |
Q |
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| T |
13127510 |
tattgcgctgctgcgtgcataaaaaatgagggagaagagtttgcttcaacaatcca |
13127455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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