View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-5 (Length: 625)
Name: NF5413-Insertion-5
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 39394875 - 39395492
Alignment:
| Q |
8 |
gatttagcattcgcgctaaaagaagtggcaacagaagctaaccaagtgaaaacaaaactaaccttaagtcaagttgaactagaacacacaaaaggcgatg |
107 |
Q |
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| T |
39394875 |
gatttagcattcgcactaaaagaagtggcaacagaagctaaccaagtgaaaacaaaactaaccttaagtcaagttgaactagaacacacaaaaggcgacg |
39394974 |
T |
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| Q |
108 |
ctgagcgttggaaaacgatgttagaaagcacagaagagaagtacaaagagcatctagacgcgacaagaaaagaagctgagaggttcaaaaacaccgcgga |
207 |
Q |
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| T |
39394975 |
ctgagcgttggaaaacgatgttagaaagcacagaagagaagtacaaagagcttctagacgcgacaagaaaagaagctgagaggttcaaaaacaccgcgga |
39395074 |
T |
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| Q |
208 |
gagattgagattagaagctgaagaatcacttttagcatggaatggaaaagaaactgagtttgttacttgtattaaaagagctgatgaggaaaggttgctt |
307 |
Q |
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| T |
39395075 |
gagattgagattagaagctgaagaatcacttttagcatggaatggaaaagaaactgagtttgttacttgtattaaaagagctgatgaggaaaggttgctt |
39395174 |
T |
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| Q |
308 |
gcacaacaggaaacatcaagattactagatttgcttcaagaagctgagagtaaaacaaaagtttcaaaggaagagaatcaaaaattgcgcgacatactaa |
407 |
Q |
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| T |
39395175 |
gcacaacaagaaacatcaagattactagatttgcttcaagaagctgagagtaaaacaaaagtttcaaaggaagagaatcaaaaattgcgcgacatactaa |
39395274 |
T |
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| Q |
408 |
aacaagctttgaatgaagctaatgttgcgaaagaagctgccgaaattgcaaaagctgaaaatggtagattacaagatagtctgagtttgcttgttcatgg |
507 |
Q |
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| T |
39395275 |
aacaagctctgaatgaagctaatgttgcgaaagaagcttccgaaattgcaaaagctgaaaatggtagattacaagatagtctgagtttgcttgttcatga |
39395374 |
T |
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| Q |
508 |
gaatgagatgttgaaaattcatgaagctgcatcatttgagaatatcaaagagttgaggaaaatgctatcagaaacatcaaccaaagagtttcgaatcgaa |
607 |
Q |
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| T |
39395375 |
gaatgagatgttgaaaattcatgaagctgcatcatttgagaatatcaaagagttgaagaaaatgctatcagaaacatcaaccaaagagtttcgaatcgaa |
39395474 |
T |
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| Q |
608 |
gatttagagaaatattta |
625 |
Q |
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| T |
39395475 |
gatttagagaaatattta |
39395492 |
T |
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