View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413-Insertion-6 (Length: 528)
Name: NF5413-Insertion-6
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 45210214 - 45210735
Alignment:
| Q |
8 |
ggatcttgtgcccatgttcttagtacaccacctttgcagcaatttgcaaattgtttattataggacgttccagggcgcaagtctataattgttggatcct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
45210214 |
ggatcttgtgcccatgttcttagtacaccacctttgcagcaatttgcaaattgtttattatagggcgttccagggtgcaagtctataattgttggatcct |
45210313 |
T |
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| Q |
108 |
tcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccctcccaccacggcccatatgatctttttctctaccca |
207 |
Q |
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| T |
45210314 |
tcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccctcccaccacagcccatatgatctctttctctaccca |
45210413 |
T |
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| Q |
208 |
actccatcctacgaaccatccgggtgctgttatatgacgatattgttgaaagttgtttattgtaactaccgcctgtccagtttcaattgtttcttagaca |
307 |
Q |
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| T |
45210414 |
actccatcctacgaaccatccgggtgctgttatatgacgatattgttgaaagttgtttattgtaactaccgcctgtccagtttcaattgtttcttagaca |
45210513 |
T |
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| Q |
308 |
tcacaatataaactcaattcattctaaatgaccgttgcggctattacaagtaagagtttaataaaaccttatgcctaactcaacccttcaaaatcagctt |
407 |
Q |
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| T |
45210514 |
tcacaatataaactcaattcattctaaatgaccgttgcggctattacaaataagagtttaataaaaccttatgcctaactcaacccttcaaaatcagctt |
45210613 |
T |
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| Q |
408 |
gtat-gaagaggatgtcttccacttgtaaacactttttcatgtcattggtccaatgtgagactatttagaactagattgcttagacaacaagttaccttg |
506 |
Q |
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| T |
45210614 |
gtatggaagaggatgtcttccacttgtgaacactttttcatgtcattggtccaatgtgagactagttagaactagattgcttagacaacaagttaccttg |
45210713 |
T |
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| Q |
507 |
ctaagtagttagtttaagtgat |
528 |
Q |
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| T |
45210714 |
ctaagtagttagtttaagtgat |
45210735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 9101216 - 9101160
Alignment:
| Q |
472 |
ttagaactagattgcttagacaacaag-ttaccttgctaagtagttagtttaagtgat |
528 |
Q |
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| T |
9101216 |
ttagaactagattgcttagacagcaagtttaccttgct-agtagttagtttcagtgat |
9101160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 5007215 - 5007166
Alignment:
| Q |
7 |
aggatcttgtgcccatgttcttagtacaccacctttgcagcaatttgcaa |
56 |
Q |
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||||||||| ||||||| || || ||||||||||||||||||||||||| |
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| T |
5007215 |
aggatcttgagcccatgaactaagcacaccacctttgcagcaatttgcaa |
5007166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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