View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_11 (Length: 460)
Name: NF5413_high_11
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 5332712 - 5332284
Alignment:
| Q |
14 |
gagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattactag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332712 |
gagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattactag |
5332613 |
T |
|
| Q |
114 |
ataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcatctg |
213 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5332612 |
ataaggacggcgataaacaagctttgtaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcatctg |
5332513 |
T |
|
| Q |
214 |
agtaaatcatttagttaaccaagaaaatgacataatcttaattttattacaatagtagttaatgttggctttccaaatttcatacaagggaaatgacatg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332512 |
agtaaatcatttagttaaccaagaaaatgacataatcttaattttattacaattgtagttaatgttggctttccaaatttcatacaagggaaatgacatg |
5332413 |
T |
|
| Q |
314 |
ggagttttcattaaagctaacatagcttggacactcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaacc |
413 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332412 |
ggagttttcattaaagctaacatagcttggacact-gagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaacc |
5332314 |
T |
|
| Q |
414 |
ttgtaaccaaccttgtttaattggtgtgat |
443 |
Q |
| |
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||||||||||||||||||| |||||||||| |
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| T |
5332313 |
ttgtaaccaaccttgtttacttggtgtgat |
5332284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Original strand, 29519344 - 29519773
Alignment:
| Q |
14 |
gagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattactag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29519344 |
gagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattactag |
29519443 |
T |
|
| Q |
114 |
ataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcatctg |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29519444 |
ataaggacgacgataaacaagctttacaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcatctg |
29519543 |
T |
|
| Q |
214 |
agtaaatcatttagttaaccaagaaaatgacataatcttaattttattacaatagtagttaatgttggctttccaaatttcatacaagggaaatgacatg |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
29519544 |
agtaaatcatttagttaaccaagaaaatgacataatcttaattttattacagaagtagttaacgttggctttccaaatttcatacaaggaaaatgacatg |
29519643 |
T |
|
| Q |
314 |
ggagttttcattaaagctaacatagcttggacactcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaacc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29519644 |
ggagttttcattaaagctaacatagcttggacactcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaacc |
29519743 |
T |
|
| Q |
414 |
ttgtaaccaaccttgtttaattggtgtgat |
443 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
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|
| T |
29519744 |
ttgtaaccaaccttgtttacttggtgtgat |
29519773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 37981878 - 37981957
Alignment:
| Q |
364 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttaattggtgtgat |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37981878 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttacttggtgtgat |
37981957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 45661592 - 45661524
Alignment:
| Q |
364 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgttta |
432 |
Q |
| |
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|||| ||||||||| |||| ||||||||| ||||||| |||||||| || |||||||||||||||||| |
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| T |
45661592 |
gctaggaaccaatagaacaggttcaaattactttgattcaaatcaaacccatgtaaccaaccttgttta |
45661524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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