View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_12 (Length: 459)
Name: NF5413_high_12
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 35864701 - 35864921
Alignment:
| Q |
10 |
aagaatatttagatcactatgttcctcggacgtatttctaaaactttgatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaa |
109 |
Q |
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| T |
35864701 |
aagaatatttagatcactatgttcctcggacgtatttctaaaactttgatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaa |
35864800 |
T |
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| Q |
110 |
aagacaaaagaattaatgcattttaaagtcaaaacatagtaacaaacccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaac |
209 |
Q |
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| T |
35864801 |
aagacaaaagaattaatgcattttaaagtcaaaacatggtaacaaacccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaac |
35864900 |
T |
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| Q |
210 |
atctttatatgcatgcattgc |
230 |
Q |
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| T |
35864901 |
atctttatatgcatgcattgc |
35864921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 295 - 443
Target Start/End: Original strand, 35864986 - 35865134
Alignment:
| Q |
295 |
ttttagcatgtatgagtgcctacaaatttgaccccttttaactcagcactgatagtagattagttttcaaacggaagacatattcacgtagggcacatca |
394 |
Q |
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| T |
35864986 |
ttttagcatgtatgagtgcctacaaatttgaccccttttaactcagcactgatagtagatttgttttcaaacggaagacatattcacgtagggcacatca |
35865085 |
T |
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| Q |
395 |
tatggaaatatggcttaaattaaattaaatgcaacagaggtgaaattag |
443 |
Q |
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| T |
35865086 |
tatggaaatatggcttaaattaaattaaatgcaactgaggtgaaattag |
35865134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 34814289 - 34814432
Alignment:
| Q |
17 |
tttagatcactatgttcctcggacgtatttctaaaacttt-gatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaaaagaca |
115 |
Q |
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||||||||||||||||||| |||| || |||||||||| | |||||||||||||||||| | | ||||||||||||||||||||||| |||||||| |
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| T |
34814289 |
tttagatcactatgttccttggacttagttctaaaactcaagttcatgtagaaagggaatcctaagagcttaaatatgcttcccattttattaaaagac- |
34814387 |
T |
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| Q |
116 |
aaagaattaatgcattttaaagtcaaaacatagtaacaaacccaaa |
161 |
Q |
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| T |
34814388 |
-aagaatcaatgcattttaaagtcaaaacataagaacaaacccaaa |
34814432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 34814565 - 34814617
Alignment:
| Q |
157 |
ccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaac |
209 |
Q |
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| T |
34814565 |
ccaaaacaaattcaacactatttacacttttactcctgcttttgacagccaac |
34814617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 34814466 - 34814516
Alignment:
| Q |
91 |
atgcttcccattttagtaaaagacaaaagaattaatgcattttaaagtcaaaa |
143 |
Q |
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| T |
34814466 |
atgcttcccattttattaaaagacaa--gaatcaatgcattttaaagtcaaaa |
34814516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 34814719 - 34814827
Alignment:
| Q |
295 |
ttttagcatgtatgagtgcct-acaaatttgaccccttttaactcagcactgatagtagattagttttcaaacggaagacatattcacgtagggcacatc |
393 |
Q |
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| T |
34814719 |
ttttagtaggtaagagtgcctgacaaatttgaccccttttaactcaactctaatagtagatatattttcaattgccagatacgttcaagtagggcacatc |
34814818 |
T |
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| Q |
394 |
atatggaaa |
402 |
Q |
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| T |
34814819 |
atatggaaa |
34814827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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