View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_high_13 (Length: 452)

Name: NF5413_high_13
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_high_13
NF5413_high_13
[»] chr3 (14 HSPs)
chr3 (18-197)||(10591864-10592043)
chr3 (294-442)||(9980965-9981113)
chr3 (294-431)||(10360144-10360281)
chr3 (195-266)||(10591733-10591805)
chr3 (294-347)||(10584533-10584586)
chr3 (259-300)||(10584618-10584659)
chr3 (384-431)||(10264483-10264530)
chr3 (407-442)||(10584471-10584506)
chr3 (394-442)||(10035589-10035637)
chr3 (269-300)||(9981145-9981176)
chr3 (269-300)||(10360081-10360112)
chr3 (308-345)||(10035653-10035690)
chr3 (394-442)||(10130514-10130562)
chr3 (31-87)||(10429939-10429995)
[»] scaffold0083 (2 HSPs)
scaffold0083 (294-442)||(54024-54172)
scaffold0083 (269-300)||(53961-53992)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 10592043 - 10591864
Alignment:
Q  18 ataatttacatcttcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatcttttgacttttaaaatataaactccttatgattt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10592043 ataatttacgtcttcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatcttttgacttttaaaatataaactccttatgattt 10591944  T
Q  118 aagcatgatttagtggatatgttagtaataaggtttacaatagtataatacaggagattataggatagcaaaatcgggtt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591943 aagcatgatttagtggatatgttagtaataaggtttacaatagtataatacaggagattataggatagcaaaatcgggtt 10591864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 294 - 442
Target Start/End: Complemental strand, 9981113 - 9980965
Alignment:
Q  294 tacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaagccgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 393  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9981113 tacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 9981014  T
Q  394 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981013 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 9980965  T

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Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 10360144 - 10360281
Alignment:
Q  294 tacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaagccgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 393  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10360144 tacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatggaagctgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 10360243  T
Q  394 cttcaattcatcaagtgagcagattatcatccacatag 431  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10360244 cttcaattcatcaagtgagcagattatcatccacatag 10360281  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 10591805 - 10591733
Alignment:
Q  195 gttataaattgcatataaacc-tactgcattgtacaaattaagaatatatgctaaagaatatgttataaattg 266  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591805 gttataaattgcatataaaccctactgcattgtacaaattaagaatatatgctaaagaatatgttataaattg 10591733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 10584586 - 10584533
Alignment:
Q  294 tacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584586 tacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaa 10584533  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 10584659 - 10584618
Alignment:
Q  259 ataaattgctaaaaaatgttacaaattaagaatattacaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10584659 ataaattgctaaaaaatgttacaaattaagaatattacaaac 10584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 10264530 - 10264483
Alignment:
Q  384 aagcagttttcttcaattcatcaagtgagcagattatcatccacatag 431  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10264530 aagcatttttcttcaattcatcaagtgagctgattatcatccacatag 10264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 407 - 442
Target Start/End: Complemental strand, 10584506 - 10584471
Alignment:
Q  407 agtgagcagattatcatccacatagctaggcctttg 442  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584506 agtgagcagattatcatccacatagctaggcctttg 10584471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 10035637 - 10035589
Alignment:
Q  394 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 442  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  10035637 cttcaattcacgaaatgagctgattatcatccacatagctaggcctttg 10035589  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 9981176 - 9981145
Alignment:
Q  269 aaaaaatgttacaaattaagaatattacaaac 300  Q
    ||||||||||||||||||||||||||||||||    
T  9981176 aaaaaatgttacaaattaagaatattacaaac 9981145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 10360081 - 10360112
Alignment:
Q  269 aaaaaatgttacaaattaagaatattacaaac 300  Q
    ||||||||||||||||||||||||||||||||    
T  10360081 aaaaaatgttacaaattaagaatattacaaac 10360112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 10035690 - 10035653
Alignment:
Q  308 tagcagctaagtaaattaaatcttgtggcaatcaatgg 345  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  10035690 tagcagctgagtaaattaaatcttgtggcaatgaatgg 10035653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 10130562 - 10130514
Alignment:
Q  394 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 442  Q
    |||||||||| ||| |||||  |||||||||||||||||| ||||||||    
T  10130562 cttcaattcaccaaatgagctaattatcatccacatagctgggcctttg 10130514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 10429939 - 10429995
Alignment:
Q  31 tcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatctttt 87  Q
    |||||| ||||| |||||||||  || || ||||||||| |||||||||||||||||    
T  10429939 tcaaaactgtactaacatagtattttgtcctctgtctgattttgaactcaatctttt 10429995  T

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Target: scaffold0083 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 294 - 442
Target Start/End: Original strand, 54024 - 54172
Alignment:
Q  294 tacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaagccgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 393  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54024 tacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagtttt 54123  T
Q  394 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54124 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 54172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 53961 - 53992
Alignment:
Q  269 aaaaaatgttacaaattaagaatattacaaac 300  Q
    ||||||||||||||||||||||||||||||||    
T  53961 aaaaaatgttacaaattaagaatattacaaac 53992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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