View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_22 (Length: 394)
Name: NF5413_high_22
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 35374478 - 35374832
Alignment:
| Q |
21 |
atcaccatcaccatcaccatcactccctattttcttcaaacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattct |
120 |
Q |
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| T |
35374478 |
atcactatcaccatcaccatcactccctattttcttcacacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattct |
35374577 |
T |
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| Q |
121 |
aactcgccttcaaacaatgctgataaggcacgaagatacgaatacctcatgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagac |
220 |
Q |
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| T |
35374578 |
aactagccttcaaacaatgctgataaggcacgaagatacgaatacctcacgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagac |
35374677 |
T |
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| Q |
221 |
gagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaag |
320 |
Q |
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| T |
35374678 |
gagttggtcagaaacaccatccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaag |
35374777 |
T |
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| Q |
321 |
acaataatgacattggtacactccctctttgttcccacagcttccatctcgaatg |
375 |
Q |
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| T |
35374778 |
acaataatgacattggtacactccctctttgttcccacagcttccatctcgaatg |
35374832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 370
Target Start/End: Original strand, 35380949 - 35381081
Alignment:
| Q |
238 |
catccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggt |
337 |
Q |
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| T |
35380949 |
catcctctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattgga |
35381048 |
T |
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| Q |
338 |
acactccctctttgttcccacagcttccatctc |
370 |
Q |
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| T |
35381049 |
acgctccctctttgttcccagagtttccatctc |
35381081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 35351663 - 35351735
Alignment:
| Q |
299 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcg |
371 |
Q |
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| T |
35351663 |
atttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccacattttccatctcg |
35351735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 35356797 - 35356869
Alignment:
| Q |
299 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcg |
371 |
Q |
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| T |
35356797 |
atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctcg |
35356869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 30811863 - 30811986
Alignment:
| Q |
180 |
ctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaaga |
279 |
Q |
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||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||| |
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| T |
30811863 |
ctaacgaccaactgcaaacacatgtcgttcataacttagacgagttggtcataaataccatctccttctccatctacaccgctaagtatgcaaaagaagc |
30811962 |
T |
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| Q |
280 |
atctctacgtgattgtgttatttg |
303 |
Q |
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|| | |||| | ||||||||||| |
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| T |
30811963 |
atttgcacgttactgtgttatttg |
30811986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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