View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_26 (Length: 349)
Name: NF5413_high_26
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 4951672 - 4951999
Alignment:
| Q |
3 |
taaagcttttatttcatatataagcttctaaaactcatacttgtccaatgtatatggacaagtaaaatatagcaggtggatggatcatagaaaattaaaa |
102 |
Q |
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| T |
4951672 |
taaagcttttattt-atatatatgcttctaaaactcatacttgtccaatgaatatggacaagtaaaatatagcaggtggatggatcatagaaagttaaaa |
4951770 |
T |
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| Q |
103 |
agaaggaacatagagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttatgttga |
202 |
Q |
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| T |
4951771 |
agaaggaacatagagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttgtgttga |
4951870 |
T |
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| Q |
203 |
gatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttctt |
302 |
Q |
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| T |
4951871 |
gatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttctt |
4951970 |
T |
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| Q |
303 |
ctttaagacgtgtattctcttgaacaact |
331 |
Q |
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| T |
4951971 |
ctttaagtcgtgcattctcttgaacaact |
4951999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 164 - 333
Target Start/End: Complemental strand, 10483843 - 10483671
Alignment:
| Q |
164 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
260 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
261 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaacttt |
333 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaacttt |
10483671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10483971 - 10483922
Alignment:
| Q |
1 |
tctaaagcttttatttcatatataagcttctaaaactcatacttgtccaa |
50 |
Q |
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| T |
10483971 |
tctaaagcttttatttcatatttatgcttctaaaactcatacttgtccaa |
10483922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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