View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_31 (Length: 323)
Name: NF5413_high_31
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 38521366 - 38521643
Alignment:
| Q |
19 |
cacagactatcctaaatccgttgtcgattagaaagaagctaaaaacacctacctctcaaggaaatggcactcttcaaaagtcatgatcatcgactaggat |
118 |
Q |
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| T |
38521366 |
cacacactatcctaaatccgttgtcgattagaaagaagctaaaaacacctacctctcaaggaaatgacactcttcaaaagtcatgatcatcgactaggat |
38521465 |
T |
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| Q |
119 |
tatactttcttacccttgcag-------ttaggacttaggacaccaaaatgtaatattgttattgttccaaagcacttgatagagtgtatttacannnnn |
211 |
Q |
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| T |
38521466 |
tatactttcttacccttgcagttaggacttaggacttaggacaccaaaatgtaatattgttattgttccaaagcacttgatagagtgtatttacattttt |
38521565 |
T |
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| Q |
212 |
nnaggagaatgcatttacaggagaggaacttctctagcagtttttgttgttgtgctggcatccaaacccttaattata |
289 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38521566 |
ttaggagaatgcatttaaaggagaggaacttctctagcagtttttgttgttgtgctggcatctaaacccttaattata |
38521643 |
T |
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