View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_35 (Length: 310)
Name: NF5413_high_35
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 40403614 - 40403329
Alignment:
| Q |
6 |
gtagataattctgctgtagatgccttgttttattcttgatcataggtccctccaacctataattggattaatcgtgtagttatggttatattataagttc |
105 |
Q |
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| T |
40403614 |
gtagataattctgctgtagatgccttgttttattcttgatcataggtccttccaacctataattggattaatcctgtagttatggttatattataagttc |
40403515 |
T |
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| Q |
106 |
agtagttggaaaatgatgttagattcctttgattttctcactttctttcccttaattgtttgaatttgaattataacacaatcaaccacatctagactgt |
205 |
Q |
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| T |
40403514 |
agttgttggaaaatgatgttgatttcttttgattttctcgctttgtttcccttaatagtttgaatttgaattgtaatgcaaccagccacatctagaccgc |
40403415 |
T |
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| Q |
206 |
ccaatcttgatagaatggtcgagattttgatgccaattttcannnnnnnnaaaatctaaaatacctagtttgaaacggtccagatgtgg |
294 |
Q |
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| T |
40403414 |
ccaatcttgatcggatggtcgagattcaaatgctgattttgatttttt---aaatctaaaatacctagtttgaaacggtctagatgtgg |
40403329 |
T |
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