View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_high_36 (Length: 304)

Name: NF5413_high_36
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_high_36
NF5413_high_36
[»] scaffold0015 (2 HSPs)
scaffold0015 (9-288)||(40361-40640)
scaffold0015 (9-113)||(32309-32413)
[»] chr1 (15 HSPs)
chr1 (18-288)||(24233408-24233669)
chr1 (18-92)||(24242846-24242920)
chr1 (31-91)||(23896139-23896199)
chr1 (31-87)||(24629213-24629269)
chr1 (28-87)||(24246496-24246555)
chr1 (11-92)||(24634787-24634868)
chr1 (28-81)||(25478864-25478917)
chr1 (11-91)||(24513045-24513125)
chr1 (11-81)||(25610948-25611018)
chr1 (27-89)||(24626770-24626832)
chr1 (11-81)||(45692869-45692942)
chr1 (31-81)||(51782798-51782848)
chr1 (33-86)||(24805076-24805129)
chr1 (30-82)||(51381456-51381508)
chr1 (30-82)||(51858604-51858656)
[»] chr7 (1 HSPs)
chr7 (11-219)||(1421151-1421359)
[»] chr5 (12 HSPs)
chr5 (28-93)||(3181704-3181769)
chr5 (30-81)||(11081812-11081863)
chr5 (30-81)||(23766863-23766914)
chr5 (30-81)||(23816711-23816762)
chr5 (31-80)||(20292995-20293044)
chr5 (30-81)||(23769647-23769698)
chr5 (30-81)||(23819495-23819546)
chr5 (31-80)||(20301443-20301492)
chr5 (31-80)||(20305856-20305905)
chr5 (31-80)||(20310260-20310309)
chr5 (33-81)||(1427697-1427745)
chr5 (33-81)||(23732166-23732214)
[»] chr4 (2 HSPs)
chr4 (11-91)||(11032899-11032979)
chr4 (30-74)||(55419788-55419832)
[»] chr3 (29 HSPs)
chr3 (30-81)||(2696733-2696784)
chr3 (30-81)||(4142135-4142186)
chr3 (30-81)||(4157945-4157996)
chr3 (30-80)||(1437996-1438045)
chr3 (30-80)||(2456249-2456299)
chr3 (30-81)||(1891065-1891116)
chr3 (30-81)||(3754599-3754650)
chr3 (30-80)||(771500-771550)
chr3 (31-80)||(13498224-13498273)
chr3 (30-80)||(2442039-2442089)
chr3 (30-80)||(7942485-7942535)
chr3 (31-81)||(9608346-9608396)
chr3 (30-79)||(2631358-2631407)
chr3 (17-78)||(23197014-23197075)
chr3 (38-78)||(2459277-2459317)
chr3 (30-78)||(23230983-23231031)
chr3 (38-81)||(803227-803270)
chr3 (30-81)||(1931155-1931206)
chr3 (30-81)||(1940580-1940631)
chr3 (30-81)||(7432055-7432106)
chr3 (30-80)||(956381-956431)
chr3 (31-81)||(968670-968720)
chr3 (30-80)||(7324432-7324482)
chr3 (24-78)||(7398174-7398228)
chr3 (30-80)||(37753346-37753396)
chr3 (38-80)||(43991960-43992002)
chr3 (33-78)||(997578-997623)
chr3 (33-78)||(1013968-1014013)
chr3 (30-70)||(2686313-2686353)
[»] chr2 (6 HSPs)
chr2 (30-80)||(36577366-36577416)
chr2 (30-88)||(7160755-7160813)
chr2 (30-77)||(7168691-7168738)
chr2 (30-80)||(7156193-7156243)
chr2 (38-80)||(7174382-7174424)
chr2 (30-71)||(6538843-6538884)
[»] chr6 (8 HSPs)
chr6 (31-76)||(9819831-9819876)
chr6 (31-76)||(9825517-9825562)
chr6 (30-79)||(24417487-24417536)
chr6 (31-76)||(9703888-9703933)
chr6 (30-70)||(1453841-1453881)
chr6 (30-70)||(1465533-1465573)
chr6 (30-78)||(19119065-19119113)
chr6 (30-78)||(19126359-19126407)
[»] scaffold0044 (1 HSPs)
scaffold0044 (30-81)||(89142-89193)


Alignment Details
Target: scaffold0015 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 40361 - 40640
Alignment:
Q  9 agcaaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 108  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40361 agcaaaggaaggaagacgaatcaatttaatccaagagtctttattttcatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 40460  T
Q  109 aatatgcacaagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgta 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40461 aatatgcacaagcaatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcgtaagattcctttcgcaaatgta 40560  T
Q  209 gagaaacaatgacacataagtcacgagttgaattacaatatataaaccaattaactgtgcgactcacaaatactccatgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  40561 gagaaacaatgacacataagtcacgagttgaattacaatatgtctaccaattaactgtgccactcacaaatactccatgt 40640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 32309 - 32413
Alignment:
Q  9 agcaaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32309 agcaaaggaaggaagacgaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaaagagtcgtttcttttttgagaa 32408  T
Q  109 aatat 113  Q
    |||||    
T  32409 aatat 32413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 24233408 - 24233669
Alignment:
Q  18 aggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaaaatatgcac 117  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||      ||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  24233408 aggaagactaatcaatttaatccaagattctttatttccgtattc------aagccaaacatcagtaaaagaatcggttctttttcgagaaaatatgcac 24233501  T
Q  118 aagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgtagagaaacaa 217  Q
    ||||  |||||||  ||||||||||| || | |  || || ||||||||| |||    ||||||| |  ||||||||||| | |||||| ||||||||||    
T  24233502 aagcactccctcatcatatccaaagtcgacaaaaaaaaatctccagaatcaggaactggtatttcttgataagattccttccccaaatgaagagaaacaa 24233601  T
Q  218 tgacacataagtcacgagttgaattacaatatataaaccaattaactgtgcgactcacaaatactccatgt 288  Q
    ||||||  |||||||   |||| ||| ||||  | |||||||| ||||||| || ||||| ||||||||||    
T  24233602 tgacacccaagtcac---ttgagttataataagtcaaccaattcactgtgccacacacaactactccatgt 24233669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 24242846 - 24242920
Alignment:
Q  18 aggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtc 92  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||||||||||||||||||||||||    
T  24242846 aggaagacgaattaatttaatccaagactctttatttccgtatatcttcataagccaaacatcagtaaaagagtc 24242920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 23896139 - 23896199
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 91  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  23896139 aatttaacccaagactctttatttccatattccttcataagccaaacatcaataaaagagt 23896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 24629213 - 24629269
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaa 87  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatctgtaaaa 24629269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 24246496 - 24246555
Alignment:
Q  28 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaa 87  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  24246496 atcaatttcatccaagactctttatttccgtattctttcataagccaaacatcagtaaaa 24246555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24634787 - 24634868
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtc 92  Q
    ||||| ||||||| || ||||||| |||| |||| |||||| |||| |||||||||||||||||||||||| || |||||||    
T  24634787 caaagtaaggaaggcagatcaattcaatctaagactctttaattccgtattccttcataagccaaacatcattagaagagtc 24634868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25478917 - 25478864
Alignment:
Q  28 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  25478917 atcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 25478864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 24513125 - 24513045
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 91  Q
    ||||| ||||||||   |||||||||||||| || |||||| |||||||||| |||||||||||||||||| | |||||||    
T  24513125 caaagtaaggaagatggatcaatttaatccatgactctttacttccatattctttcataagccaaacatcattgaaagagt 24513045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 25610948 - 25611018
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||| ||||||||  ||||||||||| |||||| ||||||||||| |||||| |||| ||||||||||||    
T  25610948 caaagtaaggaagatgaatcaatttaacccaagattctttatttccgtattccgtcattagccaaacatca 25611018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 24626770 - 24626832
Alignment:
Q  27 aatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaaga 89  Q
    ||||||||||| |||||| |||||| |||  |||||||||||||||||||||||  |||||||    
T  24626770 aatcaatttaacccaagactctttaattctgtattccttcataagccaaacatcgataaaaga 24626832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 45692869 - 45692942
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctt---tatttccatattccttcataagccaaacatca 81  Q
    ||||| ||| |||||||||||||||||| ||||| || |   ||| ||| ||||||||||||||||||||||||    
T  45692869 caaagtaagaaagacaaatcaatttaatacaagactcctccttatatccgtattccttcataagccaaacatca 45692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 51782848 - 51782798
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatca 51782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 24805076 - 24805129
Alignment:
Q  33 tttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaa 86  Q
    ||||||||||||||||| ||||||  ||||||| | ||||||||||||| ||||    
T  24805076 tttaatccaagagtcttcatttccgcattccttgaaaagccaaacatcattaaa 24805129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 51381456 - 51381508
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatcag 82  Q
    ||||||| ||||||| |||| |||||||||||| ||||||| ||||| |||||    
T  51381456 caatttagtccaagactcttcatttccatattctttcataatccaaatatcag 51381508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 51858656 - 51858604
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatcag 82  Q
    ||||||| ||||||| |||  |||||||||||||||||| | |||||||||||    
T  51858656 caatttagtccaagattctacatttccatattccttcatgatccaaacatcag 51858604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 1421151 - 1421359
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaaaa 110  Q
    ||||| ||||||||  |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||  |||| | |||||||    
T  1421151 caaagtaaggaagatgaatcaatttaatccaagactctttatttccgtattccttcataagccaaacatcagtagaagagtggtgactttctcgagaaaa 1421250  T
Q  111 tatgcacaagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgtaga 210  Q
     |||||||||| ||||||||  | | |||| ||| |  |||| | ||||||| |||  || ||| |||| || |  ||||||||||| | |||||| |||    
T  1421251 aatgcacaagcaatccctcatcacacccaaggttaacttattcagatttccataatgaggttgcggtatctcttgataagattccttccccaaatgaaga 1421350  T
Q  211 gaaacaatg 219  Q
    |||||||||    
T  1421351 gaaacaatg 1421359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 3181769 - 3181704
Alignment:
Q  28 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcg 93  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  3181769 atcaatttaatccaagactcttcatttccatattccttcataagccaaacatcatcaaaagagtcg 3181704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 11081863 - 11081812
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  11081863 caatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 23766863 - 23766914
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  23766863 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 23816711 - 23816762
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  23816711 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||| ||||||| |||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 23769647 - 23769698
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23769647 caatttagtccaagacgctttattcccatattccttcataatccaaacatca 23769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 23819495 - 23819546
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23819495 caatttagtccaagacgctttattcccatattccttcataatccaaacatca 23819546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||| ||||||| |||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||| ||||||| |||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||| ||||||| |||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 1427697 - 1427745
Alignment:
Q  33 tttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    |||||||||||| ||| |||||||||| || ||||||| ||||||||||    
T  1427697 tttaatccaagactctgtatttccatactctttcataacccaaacatca 1427745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 23732214 - 23732166
Alignment:
Q  33 tttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    |||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23732214 tttattccaagacgctttattcccatattccttcataatccaaacatca 23732166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 11032979 - 11032899
Alignment:
Q  11 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 91  Q
    ||||| ||||||||   ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  11032979 caaagtaaggaagatggatcaatttaatccaagactctttatttccgtattccttcatgagccaaacatcggtaaaagagt 11032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 55419832 - 55419788
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagcca 74  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||||    
T  55419832 caatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2696733 - 2696784
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  2696733 caatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 4142135 - 4142186
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4142135 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 4157945 - 4157996
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4157945 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 1438045 - 1437996
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1438045 caatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 2456299 - 2456249
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  2456299 caatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 1891065 - 1891116
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  1891065 caatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 3754650 - 3754599
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  3754650 caatttagtccaagactctttatttccatattccttcataacccaaacatca 3754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 771500 - 771550
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  771500 caatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 2442089 - 2442039
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  2442089 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 7942535 - 7942485
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||||||||||| |||||||| ||||| |||||||||| |||||||||    
T  7942535 caatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 2631407 - 2631358
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacat 79  Q
    ||||||| ||||||| |||| |||||||||||||||||||| ||||||||    
T  2631407 caatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 23197075 - 23197014
Alignment:
Q  17 aaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    |||||| || || ||||||| ||||||| |||| |||||||||||||||||| |||||||||    
T  23197075 aaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 2459317 - 2459277
Alignment:
Q  38 tccaagagtctttatttccatattccttcataagccaaaca 78  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  2459317 tccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 23230983 - 23231031
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    ||||||||||||||| |||| |||||||||||| ||||| |||||||||    
T  23230983 caatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 803227 - 803270
Alignment:
Q  38 tccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  803227 tccaagactctttatttccatattctttcataacccaaacatca 803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 1931155 - 1931206
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| |||| |||||||||||||||| |||| |||||| ||||||||||    
T  1931155 caatttagtccaggagtctttatttccatgttccatcataacccaaacatca 1931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 1940580 - 1940631
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| |||| ||||||| |||||||| ||||||||||| ||||||||||    
T  1940580 caatttagtccacgagtcttgatttccatgttccttcataacccaaacatca 1940631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 7432055 - 7432106
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| |||| || ||||||||||||||||||||||||  ||||||||||    
T  7432055 caatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 956431 - 956381
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||||  |||||| ||||| ||||||||||||||||||| |||||||||    
T  956431 caatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 968720 - 968670
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    |||||| |||| || ||||||||||||| ||||||||||| ||||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacatca 968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 7324432 - 7324482
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  7324432 caatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 7398174 - 7398228
Alignment:
Q  24 acaaatcaatttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    ||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  7398174 acaaaacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 37753346 - 37753396
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||||||| ||||| ||||||||||||| ||||| |||||||||    
T  37753346 caatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 43992002 - 43991960
Alignment:
Q  38 tccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||    
T  43992002 tccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  33 tttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    |||| ||||||| ||||||||||||||||||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  33 tttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    |||| ||||||| ||||||||||||||||||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 2686313 - 2686353
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataa 70  Q
    ||||||| ||||||| ||||| |||||||||||||||||||    
T  2686313 caatttattccaagactctttttttccatattccttcataa 2686353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 36577416 - 36577366
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  36577416 caatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 7160755 - 7160813
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaag 88  Q
    ||||||| ||||||| || ||||||||||| |||||||||||||||||||| |||||||    
T  7160755 caatttagtccaagaatcattatttccatactccttcataagccaaacatctgtaaaag 7160813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7168691 - 7168738
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaac 77  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||    
T  7168691 caatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 7156193 - 7156243
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    |||||||  |||||| |||| ||||||||| ||||||||||||||||||||    
T  7156193 caatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 7174382 - 7174424
Alignment:
Q  38 tccaagagtctttatttccatattccttcataagccaaacatc 80  Q
    ||||||| |||| |||||||||||||||||||||||| |||||    
T  7174382 tccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 6538884 - 6538843
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataag 71  Q
    ||||||| ||||||| |||||||||||||| |||||||||||    
T  6538884 caatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaa 76  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaa 76  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 24417487 - 24417536
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacat 79  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417487 caatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  31 aatttaatccaagagtctttatttccatattccttcataagccaaa 76  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1453841 - 1453881
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataa 70  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  1453841 caatttattccaagagtctttatttccataatacttcataa 1453881  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1465533 - 1465573
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataa 70  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  1465533 caatttattccaagagtctttatttccataatacttcataa 1465573  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 19119113 - 19119065
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    ||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  19119113 caatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 19126407 - 19126359
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaaca 78  Q
    ||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  19126407 caatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 89193 - 89142
Alignment:
Q  30 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 81  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  89193 caatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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