View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_high_42 (Length: 277)
Name: NF5413_high_42
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_42 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 37820359 - 37820094
Alignment:
| Q |
11 |
cacagattccagataaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacannnnnnnncaaccgttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37820359 |
cacagattccagataaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacattttttta-aaccgttt |
37820261 |
T |
|
| Q |
111 |
gattaaatgttattcagtatcaataatggtaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37820260 |
gattaaatgttattcagtatcaataatggaaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaa |
37820161 |
T |
|
| Q |
211 |
cgttaaggttcttacttacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaac |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37820160 |
cgttaaggttcttacttacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaac |
37820094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 37823704 - 37823654
Alignment:
| Q |
227 |
tacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaac |
277 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
37823704 |
tacctaagagaaacaaccatgatgtaggtaatggcagggatgagatttaac |
37823654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University